Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4K20_RS07790 Genome accession   NZ_CP032903
Coordinates   1596044..1596325 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   B5Z6D6
Organism   Helicobacter pylori strain 173-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591044..1601325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS07770 - 1591774..1593204 (-) 1431 WP_201737762.1 COG3014 family protein -
  D4K20_RS07780 comB4 1593416..1595779 (-) 2364 WP_139545672.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4K20_RS07785 comB3 1595781..1596044 (-) 264 WP_139545673.1 competence protein ComB Machinery gene
  D4K20_RS07790 comB2 1596044..1596325 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  D4K20_RS07795 - 1596470..1597297 (-) 828 WP_139545674.1 DUF5718 family protein -
  D4K20_RS07800 - 1597387..1598439 (-) 1053 WP_139545675.1 MnmA/TRMU family protein -
  D4K20_RS07805 dnaG 1598436..1600115 (-) 1680 WP_139545676.1 DNA primase -
  D4K20_RS07815 groES 1600402..1600758 (+) 357 WP_000671927.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=280718 D4K20_RS07790 WP_001272686.1 1596044..1596325(-) (comB2) [Helicobacter pylori strain 173-A-EK1]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=280718 D4K20_RS07790 WP_001272686.1 1596044..1596325(-) (comB2) [Helicobacter pylori strain 173-A-EK1]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGCTTAGAGGGATT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z6D6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989