Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4K20_RS07335 Genome accession   NZ_CP032903
Coordinates   1500760..1501023 (-) Length   87 a.a.
NCBI ID   WP_001177716.1    Uniprot ID   O25204
Organism   Helicobacter pylori strain 173-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1495760..1506023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS07315 - 1496670..1497806 (-) 1137 WP_139545622.1 VirB8/TrbF family protein -
  D4K20_RS08545 - 1497799..1497939 (-) 141 WP_000789926.1 hypothetical protein -
  D4K20_RS07325 comB4 1497936..1500512 (-) 2577 WP_139545623.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4K20_RS07330 - 1500512..1500748 (-) 237 WP_001168532.1 hypothetical protein -
  D4K20_RS07335 comB3 1500760..1501023 (-) 264 WP_001177716.1 hypothetical protein Machinery gene
  D4K20_RS07340 comB2 1501035..1501319 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  D4K20_RS07345 - 1501316..1501795 (-) 480 WP_201737757.1 hypothetical protein -
  D4K20_RS07350 - 1501899..1502687 (-) 789 WP_139545624.1 integrase -
  D4K20_RS07355 - 1502740..1503120 (-) 381 Protein_1404 hypothetical protein -
  D4K20_RS07360 - 1503120..1504505 (-) 1386 WP_139545626.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9970.83 Da        Isoelectric Point: 5.7206

>NTDB_id=280708 D4K20_RS07335 WP_001177716.1 1500760..1501023(-) (comB3) [Helicobacter pylori strain 173-A-EK1]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=280708 D4K20_RS07335 WP_001177716.1 1500760..1501023(-) (comB3) [Helicobacter pylori strain 173-A-EK1]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTATGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O25204

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

60.92

100

0.609

Multiple sequence alignment