Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D4K40_RS01985 Genome accession   NZ_CP032902
Coordinates   380166..380939 (-) Length   257 a.a.
NCBI ID   WP_139520461.1    Uniprot ID   -
Organism   Helicobacter pylori strain 280-A-EK1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375166..385939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K40_RS01945 - 375233..376201 (-) 969 WP_139520458.1 NAD(P)/FAD-dependent oxidoreductase -
  D4K40_RS01950 ccoS 376225..376416 (-) 192 WP_001090948.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D4K40_RS01955 - 376540..377121 (+) 582 WP_078260878.1 DedA family protein -
  D4K40_RS01960 - 377213..377707 (+) 495 WP_000516051.1 flavodoxin -
  D4K40_RS01965 ybeY 377761..378189 (+) 429 WP_033590337.1 rRNA maturation RNase YbeY -
  D4K40_RS01970 - 378286..378741 (+) 456 WP_139520459.1 hypothetical protein -
  D4K40_RS01975 - 378827..379591 (+) 765 WP_139520460.1 TauD/TfdA family dioxygenase -
  D4K40_RS01980 - 379606..380139 (-) 534 WP_001846912.1 Fic/DOC family protein -
  D4K40_RS01985 proC 380166..380939 (-) 774 WP_139520461.1 pyrroline-5-carboxylate reductase Machinery gene
  D4K40_RS01990 hopL 380953..384624 (-) 3672 WP_139520462.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28181.88 Da        Isoelectric Point: 8.2270

>NTDB_id=280641 D4K40_RS01985 WP_139520461.1 380166..380939(-) (proC) [Helicobacter pylori strain 280-A-EK1]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVVPSISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSTLAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACQKSVKKMCL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=280641 D4K40_RS01985 WP_139520461.1 380166..380939(-) (proC) [Helicobacter pylori strain 280-A-EK1]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAGATTTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGACATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAAGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCCGGGGTAAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGGTTGTGC
CTTCAATAAGCGAGAAAGCTTTGAGTATTATTGAAAGTTTTGGGAATTGCGTGCGAGTGGGAAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCACGCTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAAGGCTTTGCCAAACTTTTAGAAAAAGAACGCC
CTGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCAAAAGAGCGTGAAAAAAATGTGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.402

98.833

0.37