Detailed information NTG0280207

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: D9C08_RS08875
• Genome accession: NZ_CP032872
• Coordinates: 1688053..1689225 (+)
• Length: 390 a.a.
• NCBI ID: WP_014479273.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain 2KL1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1683053..1694225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C08_RS08855 (D9C08_08855)	cwlT	1684919..1685908 (+)	990	WP_033881969.1	bifunctional lytic transglycosylase/C40 family peptidase	-
D9C08_RS08860 (D9C08_08860)	-	1685923..1686429 (+)	507	WP_031600318.1	hypothetical protein	-
D9C08_RS08865 (D9C08_08865)	-	1686492..1686875 (+)	384	WP_033881966.1	cystatin-like fold lipoprotein	-
D9C08_RS08870 (D9C08_08870)	-	1686973..1687761 (+)	789	WP_014479271.1	DUF4145 domain-containing protein	-
D9C08_RS08875 (D9C08_08875)	rapF	1688053..1689225 (+)	1173	WP_014479273.1	Rap family tetratricopeptide repeat protein	Regulator
D9C08_RS08880 (D9C08_08880)	-	1689489..1689935 (-)	447	WP_014479275.1	hypothetical protein	-
D9C08_RS08885 (D9C08_08885)	yhcN	1690085..1690660 (+)	576	WP_038829230.1	YhcN/YlaJ family sporulation lipoprotein	-
D9C08_RS08895 (D9C08_08895)	yhcQ	1691681..1692300 (-)	620	Protein_1666	spore coat protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46089.52 Da
• Isoelectric Point: 5.6997

>NTDB_id=280207 D9C08_RS08875 WP_014479273.1 1688053..1689225(+) (rapF) [Bacillus subtilis subsp. subtilis strain 2KL1]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDALEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=280207 D9C08_RS08875 WP_014479273.1 1688053..1689225(+) (rapF) [Bacillus subtilis subsp. subtilis strain 2KL1]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACTCATATAAA
AAATGATGCTCTTGAGAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTACTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

• Tetratricopeptide repeat (TPR_12) (198-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369