Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D9C08_RS08200 Genome accession   NZ_CP032872
Coordinates   1578450..1580264 (+) Length   604 a.a.
NCBI ID   WP_014479193.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1573450..1585264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS08185 (D9C08_08185) glvR 1574267..1575031 (+) 765 WP_014479189.1 MurR/RpiR family transcriptional regulator GlvR -
  D9C08_RS08190 (D9C08_08190) malP 1575046..1576629 (+) 1584 WP_069837372.1 PTS maltose transporter subunit IIBC -
  D9C08_RS08195 (D9C08_08195) yfiB 1576735..1578456 (+) 1722 WP_017696472.1 ABC transporter ATP-binding protein -
  D9C08_RS08200 (D9C08_08200) rcrQ 1578450..1580264 (+) 1815 WP_014479193.1 ABC transporter ATP-binding protein Regulator
  D9C08_RS08205 (D9C08_08205) catD 1580418..1580822 (+) 405 WP_069837373.1 DoxX family oxidoreductase CatD -
  D9C08_RS08210 (D9C08_08210) catE 1580840..1581697 (+) 858 WP_069837374.1 catechol 2,3-dioxygenase -
  D9C08_RS08215 (D9C08_08215) lnrJ 1581816..1583018 (+) 1203 WP_033881373.1 two-component system sensor histidine kinase LnrJ -
  D9C08_RS08220 (D9C08_08220) lnrK 1583015..1583677 (+) 663 WP_014479199.1 two-component system response regulator LnrK -
  D9C08_RS08225 (D9C08_08225) lnrL 1583821..1584756 (+) 936 WP_014479200.1 linearmycin resistance ATP-binding protein LnrL -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67284.02 Da        Isoelectric Point: 9.6213

>NTDB_id=280204 D9C08_RS08200 WP_014479193.1 1578450..1580264(+) (rcrQ) [Bacillus subtilis subsp. subtilis strain 2KL1]
MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAERKGLLVLVMLMVVISAIFGLLGPFVIGKAIDHFIVG
KTVSGLIPVLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
LNTSVIQILSSVITFAGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIK
AYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFAVLDEKEERDDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGP
TGAGKTTVTNLLARFYEPDEGKILIDGTDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTAN
AHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHR
LNTIQRADQIVVLKDGEMIEKGSHDELIQQKGFYSDLYESQFEK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=280204 D9C08_RS08200 WP_014479193.1 1578450..1580264(+) (rcrQ) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGCTAAAAGACATCCGCAAGCCTTTCCAATATCCCAAACTGCCAATTGACAAAAAAGAAGGAGCGAAAAAGCGGGCGAA
AGCAAAGGATACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGCTGAACGAAAAGGACTGCTCGTACTTGTCATGC
TGATGGTTGTCATCAGCGCGATATTCGGGCTCCTTGGCCCCTTTGTGATCGGAAAGGCCATTGACCATTTTATCGTCGGG
AAAACGGTCAGCGGCTTGATTCCCGTTTTGCTTCTTCTGCTCGCTATCTATATCATTCAGTCCCTGTCGCTTTGGTTTCA
AAACTATTGGATGATTACGATCTCGCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATGAGCTGC
CGATTCCATTTTTTGATAAACAGCGGCACGGCGAGCTGATGAGCCGGGTGACGAATGACATCGAAAATGTCAGTTCTACC
TTAAACACGTCAGTCATTCAAATTTTGTCAAGCGTGATCACCTTTGCCGGGACGATTGCGGTGATGCTGTACATGAGCCC
GCTCCTTACATTGATTACGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGATCACCAACCGAACGGGAAAGC
TGTTTAAAGAACAGCAGAAAAACCTAGGTGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCATCAAA
GCATATTCACGTGAGAAGCAGATTACTGCTGAATTTCTCGAAAAAAACGCTGCACTCAAGACGTCGGGCTTTTGGGCGCA
GACGATTTCCGGGTTTATCCCGAAGGTCATGAACTCTTTGAATAACTTAAGCTTTACAATGATTGCGGCAATCGGCGGTT
TGTTTGCGCTGAAAGGCTGGATCTCGATCGGCTCCATCGTCGTCTTTGCCGAGTATTCAAGACAATTTACACGCCCTTTA
AACGATCTGGCCAACCAGTTTAATACGATGCTGTCCGCAATTGCCGGCGCTGAACGGGTGTTTGCCGTGCTTGATGAAAA
AGAAGAGCGCGATGATGAAAAGAACGCCGTGCATCAGCCCATCCAAACAGGCAGCATTGAATTCAGGGATGTTTCCTTCG
GTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTTCACCGTGCCTGCGGGGCAGTCCATCGCGTTTGTCGGACCG
ACGGGGGCGGGGAAGACAACCGTCACTAACCTTCTCGCCCGTTTTTACGAGCCTGACGAAGGAAAAATTTTAATCGACGG
TACAGATATTAAAACCCTTACTAGAGCAAGCCTGAGAAAAAACATGGGGTTTGTTCTTCAGGATTCTTTCTTATTTCAGG
GAACGATCAGAGAAAACATTCGCTACGGCAGGCTTGATGCTTCTGATCAGGAAGTCGAAGCCGCTGCAAAAACAGCGAAT
GCCCATAGTTTTATTGAAAGGCTGCCAAAAGGGTATGACACCGTGCTGACGCAAAACGGTTCGGGCATCAGTCAGGGACA
GAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCCGATCCGGTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACCGTTACAGAAGTCAACATTCAAGAAGCGCTTGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCACAGG
CTGAACACCATTCAAAGAGCGGACCAGATTGTGGTGCTAAAAGACGGTGAAATGATTGAAAAAGGCAGCCATGACGAGCT
GATTCAGCAAAAAGGATTTTACAGTGACTTATATGAAAGCCAATTTGAGAAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(50-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.483

96.026

0.379