Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   D9C20_RS16195 Genome accession   NZ_CP032867
Coordinates   3058508..3059425 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3053508..3064425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS16180 (D9C20_16180) trpS 3054088..3055080 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  D9C20_RS16185 (D9C20_16185) oppA 3055824..3057461 (+) 1638 WP_014479443.1 oligopeptide ABC transporter substrate-binding protein OppA -
  D9C20_RS16190 (D9C20_16190) oppB 3057569..3058504 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  D9C20_RS16195 (D9C20_16195) amiD 3058508..3059425 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  D9C20_RS16200 (D9C20_16200) oppD 3059430..3060506 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  D9C20_RS16205 (D9C20_16205) oppF 3060508..3061425 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  D9C20_RS16210 (D9C20_16210) yjbB 3061533..3062750 (+) 1218 WP_072592593.1 MFS transporter -
  D9C20_RS16215 (D9C20_16215) yjbC 3062914..3063492 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  D9C20_RS16220 (D9C20_16220) spx 3063673..3064068 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=280118 D9C20_RS16195 WP_003232954.1 3058508..3059425(+) (amiD) [Bacillus subtilis subsp. subtilis strain N4-2]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=280118 D9C20_RS16195 WP_003232954.1 3058508..3059425(+) (amiD) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment