Detailed information NTG0280104

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: D9C20_RS15065
• Genome accession: NZ_CP032867
• Coordinates: 2831361..2832533 (+)
• Length: 390 a.a.
• NCBI ID: WP_014479273.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain N4-2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2826361..2837533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C20_RS15045 (D9C20_15045)	-	2828227..2829216 (+)	990	WP_033881969.1	bifunctional lytic transglycosylase/C40 family peptidase	-
D9C20_RS15050 (D9C20_15050)	-	2829231..2829737 (+)	507	WP_031600318.1	hypothetical protein	-
D9C20_RS15055 (D9C20_15055)	-	2829800..2830183 (+)	384	WP_033881966.1	cystatin-like fold lipoprotein	-
D9C20_RS15060 (D9C20_15060)	-	2830281..2831069 (+)	789	WP_014479271.1	DUF4145 domain-containing protein	-
D9C20_RS15065 (D9C20_15065)	rapF	2831361..2832533 (+)	1173	WP_014479273.1	Rap family tetratricopeptide repeat protein	Regulator
D9C20_RS15070 (D9C20_15070)	-	2832797..2833243 (-)	447	WP_014479275.1	hypothetical protein	-
D9C20_RS15075 (D9C20_15075)	yhcN	2833393..2833968 (+)	576	WP_014479276.1	YhcN/YlaJ family sporulation lipoprotein	-
D9C20_RS15085 (D9C20_15085)	yhcQ	2834989..2835614 (-)	626	Protein_2882	spore coat protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46089.52 Da
• Isoelectric Point: 5.6997

>NTDB_id=280104 D9C20_RS15065 WP_014479273.1 2831361..2832533(+) (rapF) [Bacillus subtilis subsp. subtilis strain N4-2]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDALEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=280104 D9C20_RS15065 WP_014479273.1 2831361..2832533(+) (rapF) [Bacillus subtilis subsp. subtilis strain N4-2]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGCTCTTGAGAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTACTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

• Tetratricopeptide repeat (TPR_12) (198-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369