Detailed information NTG0280029

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: D9C20_RS01805
• Genome accession: NZ_CP032867
• Coordinates: 311341..312606 (+)
• Length: 421 a.a.
• NCBI ID: WP_014480427.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain N4-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 306341..317606

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C20_RS01785 (D9C20_01785)	yrrB	307712..308332 (-)	621	WP_206697897.1	tetratricopeptide repeat protein	-
D9C20_RS01790 (D9C20_01790)	mnmA	308418..309533 (-)	1116	WP_014480424.1	tRNA 2-thiouridine(34) synthase MnmA	-
D9C20_RS01795 (D9C20_01795)	iscSA	309564..310703 (-)	1140	WP_014480425.1	cysteine desulfurase family protein	-
D9C20_RS01800 (D9C20_01800)	cymR	310722..311138 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
D9C20_RS01805 (D9C20_01805)	rarA	311341..312606 (+)	1266	WP_014480427.1	replication-associated recombination protein A	Machinery gene
D9C20_RS01810 (D9C20_01810)	tcdA	312646..313410 (-)	765	WP_014480428.1	tRNA threonylcarbamoyladenosine dehydratase	-
D9C20_RS01820 (D9C20_01820)	aspS	313745..315523 (-)	1779	WP_014480429.1	aspartate--tRNA ligase	-
D9C20_RS01825 (D9C20_01825)	hisS	315537..316811 (-)	1275	WP_014480430.1	histidine--tRNA ligase	-
D9C20_RS01830 (D9C20_01830)	yrzK	317193..317363 (-)	171	WP_004399157.1	YrzK family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46463.29 Da
• Isoelectric Point: 7.2043

>NTDB_id=280029 D9C20_RS01805 WP_014480427.1 311341..312606(+) (rarA) [Bacillus subtilis subsp. subtilis strain N4-2]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDSGWVEQQYLPDSLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=280029 D9C20_RS01805 WP_014480427.1 311341..312606(+) (rarA) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGGATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGATCTGATTAAACAGGCACTGGAACGC
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCGATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAAGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGTGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAGCGGTTGGGTCGAACAACAATACCTCCCTGATTCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACAGGAAAATTCGAATCCGCCTTAAAGCAGGTGTATGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	99.287	100	0.993