Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   D9C18_RS04935 Genome accession   NZ_CP032865
Coordinates   915619..916791 (-) Length   390 a.a.
NCBI ID   WP_014479273.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 910619..921791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS04915 (D9C18_04915) yhcQ 912538..913163 (+) 626 Protein_982 spore coat protein -
  D9C18_RS04925 (D9C18_04925) yhcN 914184..914759 (-) 576 WP_014479276.1 YhcN/YlaJ family sporulation lipoprotein -
  D9C18_RS04930 (D9C18_04930) - 914909..915355 (+) 447 WP_014479275.1 hypothetical protein -
  D9C18_RS04935 (D9C18_04935) rapF 915619..916791 (-) 1173 WP_014479273.1 Rap family tetratricopeptide repeat protein Regulator
  D9C18_RS04940 (D9C18_04940) - 917083..917871 (-) 789 WP_014479271.1 DUF4145 domain-containing protein -
  D9C18_RS04945 (D9C18_04945) - 917969..918352 (-) 384 WP_033881966.1 cystatin-like fold lipoprotein -
  D9C18_RS04950 (D9C18_04950) - 918415..918921 (-) 507 WP_031600318.1 hypothetical protein -
  D9C18_RS04955 (D9C18_04955) - 918936..919925 (-) 990 WP_033881969.1 bifunctional lytic transglycosylase/C40 family peptidase -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 46089.52 Da        Isoelectric Point: 5.6997

>NTDB_id=279904 D9C18_RS04935 WP_014479273.1 915619..916791(-) (rapF) [Bacillus subtilis subsp. subtilis strain N3-1]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDALEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=279904 D9C18_RS04935 WP_014479273.1 915619..916791(-) (rapF) [Bacillus subtilis subsp. subtilis strain N3-1]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGCTCTTGAGAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTACTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(9-69)

Tetratricopeptide repeat (TPR_12)

(198-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

38.095

96.923

0.369