Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   D9C18_RS01750 Genome accession   NZ_CP032865
Coordinates   323012..323461 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 318012..328461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS01720 (D9C18_01720) sepM 318091..319116 (-) 1026 WP_003245451.1 protease DdcP Regulator
  D9C18_RS01725 (D9C18_01725) ylbK 319118..319900 (-) 783 WP_003232221.1 patatin family protein -
  D9C18_RS01730 (D9C18_01730) spoVV 320081..321307 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  D9C18_RS01735 (D9C18_01735) coaD 321318..321803 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  D9C18_RS01740 (D9C18_01740) rsmD 321808..322362 (-) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D9C18_RS01745 (D9C18_01745) ylbG 322685..322957 (-) 273 WP_009967171.1 YlbG family protein -
  D9C18_RS01750 (D9C18_01750) ylbF 323012..323461 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  D9C18_RS01755 (D9C18_01755) ylbE 323577..323816 (-) 240 WP_003232231.1 YlbE-like family protein -
  D9C18_RS01760 (D9C18_01760) ylbD 323832..324230 (-) 399 WP_003232233.1 YlbD family protein -
  D9C18_RS01765 (D9C18_01765) ylbC 324462..325502 (-) 1041 WP_014479713.1 CAP domain-containing protein -
  D9C18_RS01770 (D9C18_01770) ylbB 325586..326032 (-) 447 WP_003221362.1 CBS domain-containing protein -
  D9C18_RS01775 (D9C18_01775) ylbA 326172..326534 (+) 363 WP_014479712.1 YugN family protein -
  D9C18_RS01780 (D9C18_01780) ctaG 326566..327459 (-) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  D9C18_RS01785 (D9C18_01785) ctaF 327487..327819 (-) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  D9C18_RS01790 (D9C18_01790) ctaE 327822..328445 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=279873 D9C18_RS01750 WP_003221370.1 323012..323461(-) (ylbF) [Bacillus subtilis subsp. subtilis strain N3-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=279873 D9C18_RS01750 WP_003221370.1 323012..323461(-) (ylbF) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment