Detailed information NTG0279631

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: D9C16_RS08565
• Genome accession: NZ_CP032861
• Coordinates: 1542846..1544018 (-)
• Length: 390 a.a.
• NCBI ID: WP_014479273.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain N1-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1537846..1549018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C16_RS08545 (D9C16_08545)	yhcQ	1539765..1540390 (+)	626	Protein_1700	spore coat protein	-
D9C16_RS08555 (D9C16_08555)	yhcN	1541411..1541986 (-)	576	WP_014479276.1	YhcN/YlaJ family sporulation lipoprotein	-
D9C16_RS08560 (D9C16_08560)	-	1542136..1542582 (+)	447	WP_014479275.1	hypothetical protein	-
D9C16_RS08565 (D9C16_08565)	rapF	1542846..1544018 (-)	1173	WP_014479273.1	Rap family tetratricopeptide repeat protein	Regulator
D9C16_RS08570 (D9C16_08570)	-	1544310..1545098 (-)	789	WP_014479271.1	DUF4145 domain-containing protein	-
D9C16_RS08575 (D9C16_08575)	-	1545196..1545579 (-)	384	WP_033881966.1	cystatin-like fold lipoprotein	-
D9C16_RS08580 (D9C16_08580)	-	1545642..1546148 (-)	507	WP_031600318.1	hypothetical protein	-
D9C16_RS08585 (D9C16_08585)	-	1546163..1547152 (-)	990	WP_033881969.1	bifunctional lytic transglycosylase/C40 family peptidase	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46089.52 Da
• Isoelectric Point: 5.6997

>NTDB_id=279631 D9C16_RS08565 WP_014479273.1 1542846..1544018(-) (rapF) [Bacillus subtilis subsp. subtilis strain N1-1]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDALEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=279631 D9C16_RS08565 WP_014479273.1 1542846..1544018(-) (rapF) [Bacillus subtilis subsp. subtilis strain N1-1]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGCTCTTGAGAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTACTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

• Tetratricopeptide repeat (TPR_12) (198-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369