Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   D9C16_RS07435 Genome accession   NZ_CP032861
Coordinates   1315954..1316871 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310954..1321871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS07410 (D9C16_07410) spx 1311312..1311707 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  D9C16_RS07415 (D9C16_07415) yjbC 1311888..1312466 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  D9C16_RS07420 (D9C16_07420) yjbB 1312630..1313847 (-) 1218 WP_072592593.1 MFS transporter -
  D9C16_RS07425 (D9C16_07425) oppF 1313955..1314872 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  D9C16_RS07430 (D9C16_07430) oppD 1314874..1315949 (-) 1076 Protein_1477 oligopeptide ABC transporter ATP-binding protein OppD -
  D9C16_RS07435 (D9C16_07435) amiD 1315954..1316871 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  D9C16_RS07440 (D9C16_07440) oppB 1316875..1317810 (-) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  D9C16_RS07445 (D9C16_07445) oppA 1317918..1319555 (-) 1638 WP_014479443.1 oligopeptide ABC transporter substrate-binding protein OppA -
  D9C16_RS07450 (D9C16_07450) trpS 1320299..1321291 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=279616 D9C16_RS07435 WP_003232954.1 1315954..1316871(-) (amiD) [Bacillus subtilis subsp. subtilis strain N1-1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=279616 D9C16_RS07435 WP_003232954.1 1315954..1316871(-) (amiD) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364