Detailed information NTG0278972

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K38_RS27415
• Genome accession: NZ_CP027707
• Coordinates: 6050970..6051842 (+)
• Length: 290 a.a.
• NCBI ID: WP_025807493.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain DSM 21509
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6045970..6056842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K38_RS27400 (C4K38_5547)	-	6048322..6048678 (-)	357	WP_053280958.1	BON domain-containing protein	-
C4K38_RS27405 (C4K38_5548)	-	6048968..6049384 (-)	417	WP_053280959.1	pilin	-
C4K38_RS27410 (C4K38_5549)	pilC	6049750..6050967 (+)	1218	WP_053280960.1	type II secretion system F family protein	Machinery gene
C4K38_RS27415 (C4K38_5550)	pilD	6050970..6051842 (+)	873	WP_025807493.1	A24 family peptidase	Machinery gene
C4K38_RS27420 (C4K38_5551)	coaE	6051839..6052462 (+)	624	WP_053280961.1	dephospho-CoA kinase	-
C4K38_RS27425 (C4K38_5552)	yacG	6052459..6052662 (+)	204	WP_025807495.1	DNA gyrase inhibitor YacG	-
C4K38_RS27430 (C4K38_5553)	-	6052667..6052882 (-)	216	WP_053280962.1	hypothetical protein	-
C4K38_RS27435 (C4K38_5554)	-	6052948..6053637 (-)	690	WP_025807497.1	energy-coupling factor ABC transporter permease	-
C4K38_RS27440 (C4K38_5555)	-	6053634..6054101 (-)	468	WP_053280963.1	hypothetical protein	-
C4K38_RS27445 (C4K38_5556)	-	6054557..6055993 (+)	1437	WP_053280964.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32014.10 Da
• Isoelectric Point: 8.2548

>NTDB_id=278972 C4K38_RS27415 WP_025807493.1 6050970..6051842(+) (pilD) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHPIR
PWENIPVFSYLLLRGRCSACKTPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWSFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITGSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=278972 C4K38_RS27415 WP_025807493.1 6050970..6051842(+) (pilD) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTCCTCAACGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCATGCCCAGGCCCGGGACATCCTGGGGC
TGCCCGTGGAACCTGCCGGGCCGACCTACAACCTGTTGCTCCCACACTCCCAGTGCCCTCACTGCGCGCACCCGATCCGC
CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCGGCGTGCAAGACCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT
TGATGCTGTTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCTCTGTTGTGGCTGGGCCTGATCGTCAATGGTTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTCGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGG
GCCCTGGCCGGGGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTTGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.004	97.586	0.517
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Acinetobacter baumannii D1279779	49.815	93.448	0.466
pilD	Acinetobacter nosocomialis M2	49.077	93.448	0.459
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452