Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D9C10_RS02435 Genome accession   NZ_CP032853
Coordinates   449798..451612 (+) Length   604 a.a.
NCBI ID   WP_014479193.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 444798..456612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS02420 (D9C10_02420) glvR 445615..446379 (+) 765 WP_041332815.1 MurR/RpiR family transcriptional regulator GlvR -
  D9C10_RS02425 (D9C10_02425) malP 446394..447977 (+) 1584 WP_103330503.1 PTS maltose transporter subunit IIBC -
  D9C10_RS02430 (D9C10_02430) yfiB 448083..449804 (+) 1722 WP_014479192.1 ABC transporter ATP-binding protein -
  D9C10_RS02435 (D9C10_02435) rcrQ 449798..451612 (+) 1815 WP_014479193.1 ABC transporter ATP-binding protein Regulator
  D9C10_RS02440 (D9C10_02440) catD 451766..452170 (+) 405 WP_069837373.1 DoxX family oxidoreductase CatD -
  D9C10_RS02445 (D9C10_02445) catE 452188..453045 (+) 858 WP_014479195.1 catechol 2,3-dioxygenase -
  D9C10_RS02450 (D9C10_02450) lnrJ 453164..454366 (+) 1203 WP_072175501.1 two-component system sensor histidine kinase LnrJ -
  D9C10_RS02455 (D9C10_02455) lnrK 454363..455025 (+) 663 WP_015715522.1 two-component system response regulator LnrK -
  D9C10_RS02460 (D9C10_02460) lnrL 455169..456104 (+) 936 WP_121548761.1 linearmycin resistance ATP-binding protein LnrL -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67284.02 Da        Isoelectric Point: 9.6213

>NTDB_id=278972 D9C10_RS02435 WP_014479193.1 449798..451612(+) (rcrQ) [Bacillus subtilis subsp. subtilis strain MH-1]
MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAERKGLLVLVMLMVVISAIFGLLGPFVIGKAIDHFIVG
KTVSGLIPVLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
LNTSVIQILSSVITFAGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIK
AYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFAVLDEKEERDDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGP
TGAGKTTVTNLLARFYEPDEGKILIDGTDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTAN
AHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHR
LNTIQRADQIVVLKDGEMIEKGSHDELIQQKGFYSDLYESQFEK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=278972 D9C10_RS02435 WP_014479193.1 449798..451612(+) (rcrQ) [Bacillus subtilis subsp. subtilis strain MH-1]
ATGCTAAAAGACATCCGCAAGCCTTTCCAATATCCCAAACTGCCAATTGACAAAAAAGAAGGAGCGAAAAAGCGGGCGAA
AGCAAAGGATACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGCTGAACGAAAAGGACTGCTCGTACTTGTCATGC
TGATGGTTGTCATCAGCGCGATATTCGGGCTCCTTGGCCCCTTTGTGATCGGAAAGGCCATTGACCATTTTATCGTCGGG
AAAACGGTCAGCGGCTTGATTCCCGTTTTGCTTCTTCTGCTCGCTATCTATATCATTCAGTCCCTGTCGCTTTGGTTTCA
AAACTATTGGATGATTACGATCTCGCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATGAGCTGC
CGATTCCATTTTTTGATAAACAGCGGCACGGCGAGCTGATGAGCCGGGTGACGAATGACATCGAAAATGTCAGTTCTACC
TTAAACACGTCAGTCATTCAAATTTTGTCAAGCGTGATCACCTTTGCCGGGACGATTGCGGTGATGCTGTACATGAGCCC
GCTCCTTACATTGATTACGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGATCACCAACCGAACGGGAAAGC
TGTTTAAAGAACAGCAGAAAAACCTAGGTGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCATCAAA
GCATATTCACGTGAGAAGCAGATTACTGCTGAATTTCTCGAAAAAAACGCTGCACTCAAGACGTCGGGCTTTTGGGCGCA
GACGATTTCCGGGTTTATCCCGAAGGTCATGAACTCTTTGAATAACTTAAGCTTTACAATGATTGCGGCAATCGGCGGTT
TGTTTGCGCTGAAAGGCTGGATCTCGATCGGCTCCATCGTCGTCTTTGCCGAGTATTCAAGACAATTTACACGCCCTTTA
AACGATCTGGCCAACCAGTTTAATACGATGCTGTCCGCAATTGCCGGCGCTGAACGGGTGTTTGCCGTGCTTGATGAAAA
AGAAGAGCGCGATGATGAAAAGAACGCCGTGCATCAGCCCATCCAAACAGGCAGCATTGAATTCAGGGATGTTTCCTTCG
GTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTTCACCGTGCCTGCGGGGCAGTCCATCGCGTTTGTCGGACCG
ACGGGGGCGGGGAAGACAACCGTCACTAACCTTCTCGCCCGTTTTTACGAGCCTGACGAAGGAAAAATTTTAATCGACGG
TACAGATATTAAAACCCTTACTAGAGCAAGCCTGAGAAAAAACATGGGGTTTGTTCTTCAGGATTCTTTCTTATTTCAGG
GAACGATCAGAGAAAACATTCGCTACGGCAGGCTTGATGCTTCTGATCAGGAAGTCGAAGCCGCTGCAAAAACAGCGAAT
GCCCATAGTTTTATTGAAAGGCTGCCAAAAGGGTATGACACCGTGCTGACGCAAAACGGTTCGGGCATCAGTCAGGGACA
GAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCCGATCCGGTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACCGTTACAGAAGTCAACATTCAAGAAGCGCTTGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCACAGG
CTGAACACCATTCAAAGAGCGGACCAGATTGTGGTGCTAAAAGACGGTGAAATGATTGAAAAAGGCAGCCATGACGAGCT
GATTCAGCAAAAAGGATTTTACAGTGACTTATATGAAAGCCAATTTGAGAAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(50-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.483

96.026

0.379

Multiple sequence alignment