Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   D9C09_RS12265 Genome accession   NZ_CP032852
Coordinates   2339211..2339660 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2334211..2344660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS12225 (D9C09_12225) ctaE 2334228..2334851 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  D9C09_RS12230 (D9C09_12230) ctaF 2334854..2335186 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  D9C09_RS12235 (D9C09_12235) ctaG 2335214..2336107 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  D9C09_RS12240 (D9C09_12240) ylbA 2336139..2336501 (-) 363 WP_003232238.1 YugN family protein -
  D9C09_RS12245 (D9C09_12245) ylbB 2336641..2337087 (+) 447 WP_046160383.1 CBS domain-containing protein -
  D9C09_RS12250 (D9C09_12250) ylbC 2337171..2338211 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  D9C09_RS12255 (D9C09_12255) ylbD 2338442..2338840 (+) 399 WP_046160384.1 YlbD family protein -
  D9C09_RS12260 (D9C09_12260) ylbE 2338856..2339095 (+) 240 WP_003232231.1 YlbE-like family protein -
  D9C09_RS12265 (D9C09_12265) ylbF 2339211..2339660 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  D9C09_RS12270 (D9C09_12270) ylbG 2339715..2339987 (+) 273 WP_009967171.1 YlbG family protein -
  D9C09_RS12275 (D9C09_12275) rsmD 2340310..2340864 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D9C09_RS12280 (D9C09_12280) coaD 2340869..2341354 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  D9C09_RS12285 (D9C09_12285) spoVV 2341365..2342591 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  D9C09_RS12290 (D9C09_12290) ylbK 2342772..2343554 (+) 783 WP_003232221.1 patatin family protein -
  D9C09_RS12295 (D9C09_12295) sepM 2343556..2344581 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=278900 D9C09_RS12265 WP_003221370.1 2339211..2339660(+) (ylbF) [Bacillus subtilis subsp. subtilis strain GFR-12]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=278900 D9C09_RS12265 WP_003221370.1 2339211..2339660(+) (ylbF) [Bacillus subtilis subsp. subtilis strain GFR-12]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1