Detailed information NTG0278869

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: D9C09_RS09025
• Genome accession: NZ_CP032852
• Coordinates: 1729777..1730949 (+)
• Length: 390 a.a.
• NCBI ID: WP_014479273.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain GFR-12
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1724777..1735949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C09_RS09005 (D9C09_09005)	cwlT	1726643..1727632 (+)	990	WP_033881969.1	bifunctional lytic transglycosylase/C40 family peptidase	-
D9C09_RS09010 (D9C09_09010)	-	1727647..1728153 (+)	507	WP_031600318.1	hypothetical protein	-
D9C09_RS09015 (D9C09_09015)	-	1728216..1728599 (+)	384	WP_033881966.1	cystatin-like fold lipoprotein	-
D9C09_RS09020 (D9C09_09020)	-	1728697..1729485 (+)	789	WP_014479271.1	DUF4145 domain-containing protein	-
D9C09_RS09025 (D9C09_09025)	rapF	1729777..1730949 (+)	1173	WP_014479273.1	Rap family tetratricopeptide repeat protein	Regulator
D9C09_RS09030 (D9C09_09030)	-	1731213..1731659 (-)	447	WP_014479275.1	hypothetical protein	-
D9C09_RS09035 (D9C09_09035)	yhcN	1731809..1732384 (+)	576	WP_038829230.1	YhcN/YlaJ family sporulation lipoprotein	-
D9C09_RS22880 (D9C09_09040)	-	1732331..1732513 (-)	183	WP_121526178.1	hypothetical protein	-
D9C09_RS09045 (D9C09_09045)	-	1732518..1733870 (-)	1353	WP_014478984.1	IS1182 family transposase	-
D9C09_RS09055 (D9C09_09055)	yhcQ	1734983..1735602 (-)	620	Protein_1703	spore coat protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46089.52 Da
• Isoelectric Point: 5.6997

>NTDB_id=278869 D9C09_RS09025 WP_014479273.1 1729777..1730949(+) (rapF) [Bacillus subtilis subsp. subtilis strain GFR-12]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDALEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=278869 D9C09_RS09025 WP_014479273.1 1729777..1730949(+) (rapF) [Bacillus subtilis subsp. subtilis strain GFR-12]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACTCATATAAA
AAATGATGCTCTTGAGAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTACTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

• Tetratricopeptide repeat (TPR_12) (198-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369