Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   IBB3154_RS09010 Genome accession   NZ_CP027644
Coordinates   1825792..1826622 (-) Length   276 a.a.
NCBI ID   WP_003705547.1    Uniprot ID   F5VDI1
Organism   Ligilactobacillus salivarius strain IBB3154     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1820792..1831622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB3154_RS08990 (IBB3154_1785) - 1821923..1822879 (+) 957 WP_164480220.1 DhaKLM operon coactivator DhaQ -
  IBB3154_RS08995 (IBB3154_1786) dhaS 1822880..1823404 (-) 525 WP_003709398.1 dihydroxyacetone kinase transcriptional activator DhaS -
  IBB3154_RS09000 (IBB3154_1787) brnQ 1823550..1824932 (-) 1383 WP_164480221.1 branched-chain amino acid transport system II carrier protein -
  IBB3154_RS09005 (IBB3154_1788) - 1825471..1825737 (+) 267 WP_003701014.1 hypothetical protein -
  IBB3154_RS09010 (IBB3154_1789) endA 1825792..1826622 (-) 831 WP_003705547.1 DNA/RNA non-specific endonuclease Machinery gene
  IBB3154_RS09015 (IBB3154_1790) - 1826991..1827593 (+) 603 WP_164480222.1 nitroreductase family protein -
  IBB3154_RS09020 (IBB3154_1791) - 1827647..1829578 (-) 1932 WP_164480223.1 heavy metal translocating P-type ATPase -
  IBB3154_RS09025 (IBB3154_1792) - 1829728..1830042 (+) 315 WP_034982423.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30436.81 Da        Isoelectric Point: 10.4970

>NTDB_id=278637 IBB3154_RS09010 WP_003705547.1 1825792..1826622(-) (endA) [Ligilactobacillus salivarius strain IBB3154]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGLLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=278637 IBB3154_RS09010 WP_003705547.1 1825792..1826622(-) (endA) [Ligilactobacillus salivarius strain IBB3154]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTAAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGCCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGGCAGGTACAAAATTTGCCTGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCGCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGGGCA
CATTTGGAAGCTAAATCATCAGATGGTTTGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGGAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5VDI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489

Multiple sequence alignment