Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   DSM101856_RS06765 Genome accession   NZ_CP027639
Coordinates   1308293..1308808 (-) Length   171 a.a.
NCBI ID   WP_002903863.1    Uniprot ID   A0AB36G830
Organism   Campylobacter coli strain meC0280     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1303293..1313808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM101856_RS06750 (DSM101856_01365) - 1303396..1305213 (-) 1818 WP_193228038.1 motility associated factor glycosyltransferase family protein -
  DSM101856_RS06755 (DSM101856_01366) - 1305210..1307033 (-) 1824 WP_193228039.1 motility associated factor glycosyltransferase family protein -
  DSM101856_RS06760 (DSM101856_01367) - 1307043..1308293 (-) 1251 WP_002903861.1 DUF2920 family protein -
  DSM101856_RS06765 (DSM101856_01368) ctsG 1308293..1308808 (-) 516 WP_002903863.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DSM101856_RS06770 (DSM101856_01369) tsaD 1308809..1309816 (-) 1008 WP_193228040.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DSM101856_RS06775 (DSM101856_01370) - 1309813..1311207 (-) 1395 WP_002788428.1 M99 family carboxypeptidase catalytic domain-containing protein -
  DSM101856_RS06780 (DSM101856_01371) dxr 1311204..1312280 (-) 1077 WP_002834216.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  DSM101856_RS06785 (DSM101856_01372) - 1312277..1313002 (-) 726 WP_193228041.1 phosphatidate cytidylyltransferase -
  DSM101856_RS06790 (DSM101856_01373) - 1313011..1313349 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.63 Da        Isoelectric Point: 7.2439

>NTDB_id=278593 DSM101856_RS06765 WP_002903863.1 1308293..1308808(-) (ctsG) [Campylobacter coli strain meC0280]
MKKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYFLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=278593 DSM101856_RS06765 WP_002903863.1 1308293..1308808(-) (ctsG) [Campylobacter coli strain meC0280]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATTTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment