Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   DSM104627_RS02075 Genome accession   NZ_CP027638
Coordinates   420026..420541 (+) Length   171 a.a.
NCBI ID   WP_002838045.1    Uniprot ID   -
Organism   Campylobacter coli strain meC0467     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415026..425541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104627_RS02050 (DSM104627_00412) - 415482..415820 (+) 339 WP_002806264.1 hypothetical protein -
  DSM104627_RS02055 (DSM104627_00413) - 415829..416554 (+) 726 WP_002822456.1 phosphatidate cytidylyltransferase -
  DSM104627_RS02060 (DSM104627_00414) dxr 416551..417627 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  DSM104627_RS02065 (DSM104627_00415) - 417624..419018 (+) 1395 WP_002822458.1 M99 family carboxypeptidase catalytic domain-containing protein -
  DSM104627_RS02070 (DSM104627_00416) tsaD 419015..420022 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DSM104627_RS02075 (DSM104627_00417) ctsG 420026..420541 (+) 516 WP_002838045.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DSM104627_RS02080 (DSM104627_00418) - 420541..421781 (+) 1241 Protein_404 DUF2920 family protein -
  DSM104627_RS02085 (DSM104627_00420) - 421791..423641 (+) 1851 WP_002838041.1 motility associated factor glycosyltransferase family protein -
  DSM104627_RS02090 (DSM104627_00421) - 423736..425457 (+) 1722 WP_193227959.1 flagellin A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=278565 DSM104627_RS02075 WP_002838045.1 420026..420541(+) (ctsG) [Campylobacter coli strain meC0467]
MKRAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=278565 DSM104627_RS02075 WP_002838045.1 420026..420541(+) (ctsG) [Campylobacter coli strain meC0467]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTGAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment