Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   DSM104626_RS02080 Genome accession   NZ_CP027634
Coordinates   421820..422335 (+) Length   171 a.a.
NCBI ID   WP_002805379.1    Uniprot ID   -
Organism   Campylobacter coli strain meC0281     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416820..427335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104626_RS02055 (DSM104626_00412) - 417273..417611 (+) 339 WP_002825237.1 hypothetical protein -
  DSM104626_RS02060 (DSM104626_00413) - 417620..418348 (+) 729 WP_044600576.1 phosphatidate cytidylyltransferase -
  DSM104626_RS02065 (DSM104626_00414) dxr 418345..419421 (+) 1077 WP_200408853.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  DSM104626_RS02070 (DSM104626_00415) - 419418..420812 (+) 1395 WP_200408854.1 M99 family carboxypeptidase catalytic domain-containing protein -
  DSM104626_RS02075 (DSM104626_00416) tsaD 420809..421816 (+) 1008 WP_023362100.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DSM104626_RS02080 (DSM104626_00417) ctsG 421820..422335 (+) 516 WP_002805379.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DSM104626_RS02085 (DSM104626_00418) - 422335..423585 (+) 1251 WP_200408855.1 DUF2920 family protein -
  DSM104626_RS02090 (DSM104626_00419) - 423596..425419 (+) 1824 WP_200408856.1 motility associated factor glycosyltransferase family protein -
  DSM104626_RS02095 (DSM104626_00420) - 425416..427233 (+) 1818 WP_200408857.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18968.98 Da        Isoelectric Point: 8.4832

>NTDB_id=278541 DSM104626_RS02080 WP_002805379.1 421820..422335(+) (ctsG) [Campylobacter coli strain meC0281]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFKVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=278541 DSM104626_RS02080 WP_002805379.1 421820..422335(+) (ctsG) [Campylobacter coli strain meC0281]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAAGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778

Multiple sequence alignment