Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | CEP79_RS03555 | Genome accession | NZ_CP027404 |
| Coordinates | 717585..717848 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584953.1 | Uniprot ID | A0AAV3IGW5 |
| Organism | Helicobacter pylori strain FDAARGOS_300 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 712585..722848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP79_RS03525 (CEP79_03525) | groES | 712868..713224 (-) | 357 | WP_000671934.1 | co-chaperone GroES | - |
| CEP79_RS03535 (CEP79_03535) | dnaG | 713512..715191 (+) | 1680 | WP_000601572.1 | DNA primase | - |
| CEP79_RS03540 (CEP79_03540) | - | 715188..716240 (+) | 1053 | WP_000809440.1 | MnmA/TRMU family protein | - |
| CEP79_RS03545 (CEP79_03545) | - | 716330..717157 (+) | 828 | WP_001154969.1 | DUF5718 family protein | - |
| CEP79_RS03550 (CEP79_03550) | comB2 | 717304..717585 (+) | 282 | WP_001272691.1 | TrbC/VirB2 family protein | Machinery gene |
| CEP79_RS03555 (CEP79_03555) | comB3 | 717585..717848 (+) | 264 | WP_000584953.1 | hypothetical protein | Machinery gene |
| CEP79_RS03560 (CEP79_03560) | comB4 | 717850..720213 (+) | 2364 | WP_000890516.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| CEP79_RS03570 (CEP79_03570) | - | 720522..721862 (+) | 1341 | WP_001881006.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10020.11 Da Isoelectric Point: 9.5290
>NTDB_id=276912 CEP79_RS03555 WP_000584953.1 717585..717848(+) (comB3) [Helicobacter pylori strain FDAARGOS_300]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=276912 CEP79_RS03555 WP_000584953.1 717585..717848(+) (comB3) [Helicobacter pylori strain FDAARGOS_300]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATCTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATCTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |