Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LLWM1_RS01305 Genome accession   NZ_CP032500
Coordinates   249769..251646 (+) Length   625 a.a.
NCBI ID   WP_058221459.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain WM1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 244769..256646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLWM1_RS01285 (LLWM1_0244) - 244958..246235 (-) 1278 WP_058221461.1 NAD(P)/FAD-dependent oxidoreductase -
  LLWM1_RS01290 (LLWM1_0245) - 246376..247203 (+) 828 WP_058221460.1 NAD(P)H-hydrate dehydratase -
  LLWM1_RS01295 (LLWM1_0246) - 247353..247766 (+) 414 WP_003131176.1 DUF1398 domain-containing protein -
  LLWM1_RS01300 (LLWM1_0247) rcrP 247937..249772 (+) 1836 WP_003131178.1 ABC transporter ATP-binding protein Regulator
  LLWM1_RS01305 (LLWM1_0248) rcrQ 249769..251646 (+) 1878 WP_058221459.1 ABC transporter ATP-binding protein Regulator
  LLWM1_RS01310 (LLWM1_0249) - 251743..252396 (+) 654 WP_003131181.1 YcjF family protein -
  LLWM1_RS01315 (LLWM1_0250) - 252442..253461 (-) 1020 WP_003131182.1 Gfo/Idh/MocA family oxidoreductase -
  LLWM1_RS01320 (LLWM1_0251) - 253445..253612 (-) 168 WP_003131184.1 hypothetical protein -
  LLWM1_RS01325 (LLWM1_0252) - 253800..254276 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -
  LLWM1_RS01330 (LLWM1_0253) - 254490..254954 (+) 465 WP_003131188.1 GyrI-like domain-containing protein -
  LLWM1_RS01335 (LLWM1_0254) - 255019..255864 (+) 846 WP_003131189.1 aldo/keto reductase -
  LLWM1_RS01340 (LLWM1_0255) - 256030..256542 (+) 513 WP_043991118.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70224.10 Da        Isoelectric Point: 9.0369

>NTDB_id=276346 LLWM1_RS01305 WP_058221459.1 249769..251646(+) (rcrQ) [Lactococcus lactis subsp. lactis strain WM1]
MMRGNYLNRGGKGADRFQKGRRAQNFFPTIIRLFKYMRRDLWGLLFSILIASLSVILSVQAPKILGNATTVIFDGVTKSL
KNHTAIQIDMAKVESILLYVMVIYLISFISGILQQSIMTRISQRTVYTLRREFKNKMKKLPVSYYDSHSNGDIMSRMIND
MDNISGTLNQTLIQLITSLLQFVGTIYFMLTISWQLALVAFITVPLAMITVRIVAPLSQKFFAEQQKNLGLLNDQIEENY
AGHAVIKTFNHEASAEKEFAKRNDNFYKSAWKAQFVSTLIYPTMRFINNLDYLAMAVIGGLKVISGTVNLGDVQAMLQYT
NQFAQPITNISNMLNTIQATVASAERIFEVLDEKEMTDGIPVSEKVADESSKKAVSNLGATDKTDFINFDQVAFSYNENQ
SLMTDVNFSVEVGQMIAIVGPTGAGKTTMINLLERFYDVTSGKILLEGKDIREINREQLRGRMAMVLQETWLFSGTIMDN
LQYGRLEATQEEVIQAAKMAHADEFITALPQGYQTLLNEAASNISQGQRQLLTIARAFLANPEILILDEATSSVDTRTER
LIQSAMNRLLKGRTSFVVAHRLSTIRDANQILVMENGNIVEMGNHESLLKENGLYASLYNSQFAK

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=276346 LLWM1_RS01305 WP_058221459.1 249769..251646(+) (rcrQ) [Lactococcus lactis subsp. lactis strain WM1]
ATGATGAGAGGAAATTATCTCAATCGAGGTGGCAAAGGGGCTGACCGTTTTCAAAAAGGTCGGCGAGCTCAAAATTTCTT
TCCAACGATTATTCGACTTTTCAAATATATGCGCAGAGATTTATGGGGACTTCTTTTTTCAATTTTAATTGCTTCGCTGT
CAGTCATTTTGTCGGTTCAGGCACCCAAAATTTTGGGAAATGCAACCACAGTGATATTTGATGGCGTAACAAAAAGTCTA
AAAAATCATACCGCAATTCAAATTGACATGGCTAAGGTCGAATCTATTTTGCTTTATGTCATGGTCATTTATCTGATTTC
ATTTATCTCTGGGATTTTGCAACAAAGCATTATGACACGCATTTCGCAACGAACAGTTTATACTTTACGTCGTGAATTTA
AAAACAAAATGAAAAAATTGCCAGTTTCATATTATGATAGCCATAGTAATGGGGATATCATGAGTCGAATGATAAATGAT
ATGGATAATATTTCAGGGACTTTAAATCAAACTTTGATTCAGCTTATCACAAGTCTCTTGCAATTTGTTGGAACTATTTA
TTTCATGTTGACCATCTCTTGGCAGTTGGCACTCGTCGCCTTTATCACAGTTCCTTTGGCAATGATTACGGTAAGGATTG
TCGCACCTTTATCGCAAAAATTCTTTGCGGAACAACAAAAAAATCTGGGATTATTGAATGACCAAATTGAAGAAAATTAT
GCAGGGCATGCGGTCATTAAAACATTCAATCATGAAGCCTCAGCTGAAAAAGAATTCGCAAAAAGAAATGATAATTTTTA
TAAATCAGCTTGGAAAGCTCAATTTGTATCGACTTTGATTTATCCAACCATGCGATTTATCAATAATTTAGATTACTTAG
CCATGGCCGTAATTGGTGGTCTTAAAGTTATTTCAGGGACGGTTAATCTCGGAGATGTTCAAGCCATGTTGCAATATACC
AATCAATTTGCACAGCCAATCACAAATATCTCGAATATGCTCAATACCATTCAGGCTACAGTTGCGTCAGCCGAACGAAT
TTTTGAAGTATTAGATGAAAAAGAAATGACTGACGGAATTCCTGTCAGTGAAAAAGTTGCTGACGAAAGTTCAAAAAAAG
CTGTCAGTAATTTAGGAGCGACTGACAAGACTGATTTCATCAATTTTGACCAAGTCGCATTTTCTTATAATGAAAATCAA
TCCTTAATGACAGATGTTAATTTTTCCGTTGAAGTTGGGCAAATGATTGCCATTGTGGGACCAACTGGAGCAGGTAAAAC
AACAATGATTAACTTGCTCGAACGATTTTACGATGTCACTTCGGGAAAAATTTTACTTGAAGGAAAAGACATTCGCGAAA
TTAACCGTGAACAATTACGTGGACGAATGGCAATGGTTTTACAAGAAACCTGGTTGTTCTCAGGGACAATTATGGATAAT
TTACAGTATGGTCGTCTTGAAGCAACACAAGAAGAAGTGATTCAAGCAGCTAAAATGGCACATGCTGATGAATTTATCAC
CGCTTTACCTCAAGGTTATCAAACCCTTTTGAATGAAGCCGCAAGCAATATTTCTCAGGGTCAAAGGCAGTTATTAACCA
TCGCCCGTGCCTTTTTAGCAAATCCAGAAATATTGATTTTGGATGAAGCCACATCCAGTGTAGATACAAGAACGGAGCGC
CTAATTCAATCAGCGATGAATCGTCTATTAAAAGGACGGACAAGCTTTGTCGTTGCTCACCGTTTATCAACTATTCGTGA
TGCCAATCAGATTTTGGTTATGGAAAATGGAAATATTGTGGAAATGGGGAACCATGAAAGTCTCCTTAAAGAAAACGGAT
TATATGCCAGCCTTTATAATTCGCAATTTGCAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(404-552)

ABC transporter transmembrane region (ABC_membrane)

(44-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.641

94.88

0.386

Multiple sequence alignment