Detailed information NTG0276052

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C6N19_RS18730
• Genome accession: NZ_CP027250
• Coordinates: 3598507..3599367 (+)
• Length: 286 a.a.
• NCBI ID: WP_005079345.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain WCHAP100004
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3593507..3604367

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6N19_RS18710 (C6N19_18620)	secG	3594114..3594443 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
C6N19_RS18715 (C6N19_18625)	tpiA	3594456..3595250 (-)	795	WP_005079338.1	triose-phosphate isomerase	-
C6N19_RS18720 (C6N19_18630)	pilB	3595542..3597254 (+)	1713	WP_032042313.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C6N19_RS18725 (C6N19_18635)	pilC	3597281..3598507 (+)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
C6N19_RS18730 (C6N19_18640)	pilD	3598507..3599367 (+)	861	WP_005079345.1	prepilin peptidase	Machinery gene
C6N19_RS18735 (C6N19_18645)	coaE	3599369..3599965 (+)	597	WP_005065869.1	dephospho-CoA kinase	-
C6N19_RS18740 (C6N19_18650)	-	3599962..3600876 (-)	915	WP_005079347.1	DMT family transporter	-
C6N19_RS18745 (C6N19_18655)	rlmB	3600912..3601661 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
C6N19_RS18750 (C6N19_18660)	-	3601764..3602090 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
C6N19_RS18755 (C6N19_18665)	-	3602167..3603477 (-)	1311	WP_002114682.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32183.67 Da
• Isoelectric Point: 7.1044

>NTDB_id=276052 C6N19_RS18730 WP_005079345.1 3598507..3599367(+) (pilD) [Acinetobacter pittii strain WCHAP100004]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=276052 C6N19_RS18730 WP_005079345.1 3598507..3599367(+) (pilD) [Acinetobacter pittii strain WCHAP100004]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTGTTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGTTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCCGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTACTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTTGGTGCAATTATTGGCATCATTTTATTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCCTACATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.853	100	0.969
pilD	Acinetobacter nosocomialis M2	96.503	100	0.965
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.328	91.608	0.434