Detailed information NTG0276052

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: D4K70_RS01755
• Genome accession: NZ_CP032476
• Coordinates: 361739..362914 (-)
• Length: 391 a.a.
• NCBI ID: WP_139532243.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 381-C-EK1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 356739..367914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K70_RS01720	-	357065..357379 (+)	315	WP_000868000.1	hypothetical protein	-
D4K70_RS01725	-	357357..358124 (+)	768	WP_139532247.1	RNA polymerase sigma factor FliA	-
D4K70_RS01730	fliM	358117..359181 (+)	1065	WP_120967820.1	flagellar motor switch protein FliM	-
D4K70_RS01735	fliY	359185..360048 (+)	864	WP_139532246.1	flagellar motor switch protein FliY	-
D4K70_RS01740	-	360077..360613 (+)	537	WP_139532245.1	YhcH/YjgK/YiaL family protein	-
D4K70_RS01745	-	360610..361107 (+)	498	WP_108363939.1	DUF2147 domain-containing protein	-
D4K70_RS01750	fur	361127..361579 (-)	453	WP_139532244.1	ferric iron uptake transcriptional regulator	-
D4K70_RS01755	rarA	361739..362914 (-)	1176	WP_139532243.1	replication-associated recombination protein A	Machinery gene
D4K70_RS01760	-	363191..363550 (-)	360	WP_139546162.1	helix-turn-helix transcriptional regulator	-
D4K70_RS01765	-	363560..364426 (-)	867	WP_139532242.1	DnaJ C-terminal domain-containing protein	-
D4K70_RS01770	-	364594..365844 (+)	1251	WP_139532241.1	outer membrane family protein	-
D4K70_RS01775	-	365979..367262 (-)	1284	WP_139546163.1	RNA-guided endonuclease TnpB family protein	-
D4K70_RS01780	tnpA	367314..367760 (+)	447	WP_001906596.1	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43748.30 Da
• Isoelectric Point: 8.3014

>NTDB_id=276052 D4K70_RS01755 WP_139532243.1 361739..362914(-) (rarA) [Helicobacter pylori strain 381-C-EK1]
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFTFELTPLKKSDLDKLCTK
ALALLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=276052 D4K70_RS01755 WP_139532243.1 361739..362914(-) (rarA) [Helicobacter pylori strain 381-C-EK1]
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTTTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACAGATTTTAAGCTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTACTTTTGAATTGACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCACTAAG
GCTTTAGCATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCTTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCCTTAGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.136	100	0.391