Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D4K88_RS01955 Genome accession   NZ_CP032475
Coordinates   379741..380514 (-) Length   257 a.a.
NCBI ID   WP_139531962.1    Uniprot ID   -
Organism   Helicobacter pylori strain 381-F-EK9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374741..385514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K88_RS01920 - 374806..375966 (+) 1161 WP_139531957.1 HP1165 family MFS efflux transporter -
  D4K88_RS01925 - 375974..376945 (-) 972 WP_139531958.1 NAD(P)/FAD-dependent oxidoreductase -
  D4K88_RS01930 ccoS 376981..377172 (-) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D4K88_RS01935 - 377293..377874 (+) 582 WP_139531959.1 DedA family protein -
  D4K88_RS01940 - 377965..378459 (+) 495 WP_139531960.1 flavodoxin -
  D4K88_RS01945 ybeY 378513..378935 (+) 423 WP_139531961.1 rRNA maturation RNase YbeY -
  D4K88_RS01950 - 379180..379713 (-) 534 WP_000549890.1 Fic/DOC family protein -
  D4K88_RS01955 proC 379741..380514 (-) 774 WP_139531962.1 pyrroline-5-carboxylate reductase Machinery gene
  D4K88_RS01960 hopL 380528..384202 (-) 3675 WP_139531963.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28227.05 Da        Isoelectric Point: 9.5467

>NTDB_id=276013 D4K88_RS01955 WP_139531962.1 379741..380514(-) (proC) [Helicobacter pylori strain 381-F-EK9]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEKICTPKGATIEGLSVLEKKGV
RGAFIKACQKSVKKIRP

Nucleotide


Download         Length: 774 bp        

>NTDB_id=276013 D4K88_RS01955 WP_139531962.1 379741..380514(-) (proC) [Helicobacter pylori strain 381-F-EK9]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTACAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCACTAGCTGGCGTAAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAATTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCACCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTTGAT
TCTAGCGTGGCGACAAACGGGAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGCATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAGGGTTTTGCCAAGCTGTTAGAAAAAGAACGCC
CCGAGATGATTATAGAGAAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATCAAAGCATGCCAAAAGAGCGTGAAAAAAATCCGCCCCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366