Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D4L53_RS01840 Genome accession   NZ_CP032472
Coordinates   361141..361914 (-) Length   257 a.a.
NCBI ID   WP_139518187.1    Uniprot ID   -
Organism   Helicobacter pylori strain 479-A2-EK4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356141..366914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L53_RS01805 - 356210..357370 (+) 1161 WP_139518184.1 HP1165 family MFS efflux transporter -
  D4L53_RS01810 - 357377..358351 (-) 975 WP_139518185.1 NAD(P)/FAD-dependent oxidoreductase -
  D4L53_RS01815 ccoS 358375..358566 (-) 192 WP_100957594.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D4L53_RS01820 - 358689..359270 (+) 582 WP_120988807.1 DedA family protein -
  D4L53_RS01825 - 359362..359856 (+) 495 WP_000516077.1 flavodoxin -
  D4L53_RS01830 ybeY 359912..360334 (+) 423 WP_139518186.1 rRNA maturation RNase YbeY -
  D4L53_RS01835 - 360581..361114 (-) 534 WP_131142519.1 Fic/DOC family protein -
  D4L53_RS01840 proC 361141..361914 (-) 774 WP_139518187.1 pyrroline-5-carboxylate reductase Machinery gene
  D4L53_RS01845 hopL 361927..365643 (-) 3717 WP_139518188.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28072.56 Da        Isoelectric Point: 6.6358

>NTDB_id=275896 D4L53_RS01840 WP_139518187.1 361141..361914(-) (proC) [Helicobacter pylori strain 479-A2-EK4]
MEILQFIGYGNMAQAILEGSHEILSKSFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVVPSISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASGLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEVIMEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=275896 D4L53_RS01840 WP_139518187.1 361141..361914(-) (proC) [Helicobacter pylori strain 479-A2-EK4]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGAG
TTTTATTTTAGAGATCACCGGAAGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTACAACCTTAAGGACTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGAGTTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCCAACATTGCAAGCAAGTTCGCCCTTTCTTCTACAGCGGTGTGTGAAAAATCGGTTGTGC
CTTCAATAAGCGAGAAAGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGTGCGCTCGCTTTTTTGAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAATGCTAGAGATTCTTTAGAATTGGTTGAAATGAGTTTTAAAGGCTTTGCCAAGTTGTTAGAAAAAGAACGCC
CTGAGGTGATCATGGAGCAAATTTGCACCCCTAAAGGCGCCACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.402

98.833

0.37