Detailed information
Bioinformatically predicted
Overview
| Name | xcpW | Type | Machinery gene |
| Locus tag | CSB68_RS08485 | Genome accession | NZ_CP027183 |
| Coordinates | 1733657..1734358 (-) | Length | 233 a.a. |
| NCBI ID | WP_000594572.1 | Uniprot ID | A0A009IN88 |
| Organism | Acinetobacter baumannii strain AR_0052 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1680007..1744377 | 1733657..1734358 | within | 0 |
Gene organization within MGE regions
Location: 1680007..1744377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSB68_RS08165 (CSB68_1645) | - | 1680007..1680516 (-) | 510 | WP_000066823.1 | lysozyme | - |
| CSB68_RS08170 (CSB68_1646) | - | 1680500..1680790 (-) | 291 | WP_087933243.1 | holin | - |
| CSB68_RS08175 (CSB68_1647) | - | 1680838..1686852 (-) | 6015 | WP_087933242.1 | phage tail protein | - |
| CSB68_RS08180 (CSB68_1648) | - | 1686909..1687565 (-) | 657 | WP_046693023.1 | tail assembly protein | - |
| CSB68_RS08185 (CSB68_1649) | - | 1687549..1688304 (-) | 756 | WP_046693024.1 | C40 family peptidase | - |
| CSB68_RS08190 (CSB68_1650) | - | 1688311..1689120 (-) | 810 | WP_087933241.1 | phage minor tail protein L | - |
| CSB68_RS08195 (CSB68_1651) | - | 1689146..1690036 (-) | 891 | Protein_1586 | phage tail protein | - |
| CSB68_RS08200 (CSB68_1652) | - | 1690090..1690431 (-) | 342 | WP_017724746.1 | phage tail protein | - |
| CSB68_RS08205 (CSB68_1653) | - | 1690507..1692570 (-) | 2064 | Protein_1588 | transglycosylase SLT domain-containing protein | - |
| CSB68_RS08210 (CSB68_1654) | tnpC | 1692602..1694227 (-) | 1626 | WP_046890010.1 | IS66 family transposase | - |
| CSB68_RS08215 (CSB68_1655) | tnpB | 1694302..1694637 (-) | 336 | WP_046880033.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CSB68_RS08220 (CSB68_1656) | tnpA | 1694634..1695017 (-) | 384 | WP_046880031.1 | IS66-like element accessory protein TnpA | - |
| CSB68_RS08225 (CSB68_1657) | - | 1695100..1696719 (-) | 1620 | WP_228200472.1 | hypothetical protein | - |
| CSB68_RS08230 (CSB68_1658) | - | 1696788..1697168 (-) | 381 | WP_001047315.1 | hypothetical protein | - |
| CSB68_RS08235 (CSB68_1659) | - | 1697248..1697463 (-) | 216 | WP_031978725.1 | hypothetical protein | - |
| CSB68_RS08240 (CSB68_1660) | - | 1697499..1698014 (-) | 516 | WP_086379245.1 | phage tail assembly chaperone family protein, TAC | - |
| CSB68_RS08245 (CSB68_1661) | - | 1698014..1698487 (-) | 474 | WP_086379246.1 | phage tail tube protein | - |
| CSB68_RS08250 (CSB68_1662) | - | 1698558..1699082 (-) | 525 | WP_086379247.1 | Rha family transcriptional regulator | - |
| CSB68_RS08255 (CSB68_1663) | - | 1699241..1699612 (-) | 372 | WP_086379248.1 | DUF3168 domain-containing protein | - |
| CSB68_RS08260 (CSB68_1664) | - | 1699609..1700124 (-) | 516 | WP_086379249.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| CSB68_RS08265 (CSB68_1665) | - | 1700128..1700484 (-) | 357 | WP_086379250.1 | phage head closure protein | - |
| CSB68_RS08270 (CSB68_1666) | - | 1700492..1700785 (-) | 294 | WP_000028576.1 | head-tail connector protein | - |
| CSB68_RS08275 (CSB68_1667) | - | 1700785..1702218 (-) | 1434 | WP_032061922.1 | phage portal protein | - |
| CSB68_RS21350 (CSB68_1668) | - | 1702229..1702396 (-) | 168 | WP_000687966.1 | hypothetical protein | - |
| CSB68_RS08280 (CSB68_1669) | - | 1702488..1703807 (-) | 1320 | WP_041172114.1 | phage major capsid protein | - |
| CSB68_RS08285 (CSB68_1670) | - | 1703804..1704397 (-) | 594 | WP_041172113.1 | HK97 family phage prohead protease | - |
| CSB68_RS08290 (CSB68_1671) | - | 1704456..1706132 (-) | 1677 | WP_086379251.1 | terminase large subunit | - |
| CSB68_RS08295 (CSB68_1673) | - | 1706136..1706618 (-) | 483 | WP_086379252.1 | terminase small subunit | - |
| CSB68_RS08300 | - | 1706752..1707054 (-) | 303 | WP_105910054.1 | HNH endonuclease | - |
| CSB68_RS08305 (CSB68_1675) | - | 1707014..1707304 (-) | 291 | WP_105910053.1 | hypothetical protein | - |
| CSB68_RS08310 (CSB68_1676) | - | 1707310..1707534 (-) | 225 | WP_087933207.1 | hypothetical protein | - |
| CSB68_RS08315 (CSB68_1677) | - | 1707524..1708054 (-) | 531 | WP_000433061.1 | hypothetical protein | - |
| CSB68_RS08320 (CSB68_1678) | - | 1708238..1708624 (-) | 387 | WP_000782273.1 | hypothetical protein | - |
| CSB68_RS21830 | - | 1708828..1708962 (+) | 135 | WP_000365476.1 | hypothetical protein | - |
| CSB68_RS08325 (CSB68_1680) | - | 1709090..1709320 (-) | 231 | WP_017724764.1 | hypothetical protein | - |
| CSB68_RS08330 (CSB68_1681) | - | 1709974..1710870 (-) | 897 | WP_087933464.1 | hypothetical protein | - |
| CSB68_RS08335 (CSB68_1682) | - | 1710936..1711409 (-) | 474 | WP_002000320.1 | hypothetical protein | - |
| CSB68_RS08340 (CSB68_1683) | - | 1711436..1711714 (-) | 279 | WP_117348069.1 | hypothetical protein | - |
| CSB68_RS08345 (CSB68_1684) | - | 1711711..1713042 (-) | 1332 | WP_000507047.1 | replicative DNA helicase | - |
| CSB68_RS08350 (CSB68_1685) | - | 1713042..1713926 (-) | 885 | WP_087933380.1 | YdaU family protein | - |
| CSB68_RS08355 (CSB68_1686) | - | 1713926..1714222 (-) | 297 | WP_001005277.1 | hypothetical protein | - |
| CSB68_RS08360 (CSB68_1687) | - | 1714281..1714466 (-) | 186 | WP_087933382.1 | hypothetical protein | - |
| CSB68_RS08365 (CSB68_1688) | - | 1714595..1715287 (+) | 693 | WP_032043017.1 | S24 family peptidase | - |
| CSB68_RS08370 (CSB68_1689) | - | 1715537..1716268 (+) | 732 | WP_046023931.1 | hypothetical protein | - |
| CSB68_RS08375 (CSB68_1690) | - | 1716271..1716687 (+) | 417 | WP_087933379.1 | hypothetical protein | - |
| CSB68_RS08385 (CSB68_1692) | - | 1716911..1717387 (+) | 477 | WP_087933378.1 | hypothetical protein | - |
| CSB68_RS21610 (CSB68_1693) | - | 1717389..1717778 (+) | 390 | WP_087933377.1 | hypothetical protein | - |
| CSB68_RS08395 (CSB68_1694) | - | 1717778..1718554 (+) | 777 | WP_087933376.1 | BRO family protein | - |
| CSB68_RS08400 (CSB68_1695) | - | 1718551..1718802 (+) | 252 | WP_000141160.1 | hypothetical protein | - |
| CSB68_RS08405 (CSB68_1696) | - | 1718768..1719727 (-) | 960 | WP_000190203.1 | tyrosine-type recombinase/integrase | - |
| CSB68_RS08410 (CSB68_1697) | zapE | 1719904..1721046 (-) | 1143 | WP_000933387.1 | cell division protein ZapE | - |
| CSB68_RS08415 (CSB68_1698) | - | 1721130..1722149 (-) | 1020 | WP_000830352.1 | helix-turn-helix domain-containing protein | - |
| CSB68_RS08420 (CSB68_1699) | - | 1722271..1723818 (+) | 1548 | WP_086262374.1 | flavin-containing monooxygenase | - |
| CSB68_RS08425 (CSB68_1700) | - | 1723868..1724779 (+) | 912 | WP_002056161.1 | lysine exporter LysO family protein | - |
| CSB68_RS08430 (CSB68_1701) | pyrF | 1724776..1725474 (-) | 699 | WP_000392925.1 | orotidine-5'-phosphate decarboxylase | - |
| CSB68_RS08435 (CSB68_1702) | - | 1725642..1726007 (-) | 366 | WP_001269278.1 | lipopolysaccharide assembly protein LapA domain-containing protein | - |
| CSB68_RS08440 (CSB68_1703) | - | 1726032..1726334 (-) | 303 | WP_000205997.1 | integration host factor subunit beta | - |
| CSB68_RS08445 (CSB68_1704) | rpsA | 1726491..1728164 (-) | 1674 | WP_000140309.1 | 30S ribosomal protein S1 | - |
| CSB68_RS08450 (CSB68_1705) | cmk | 1728269..1728955 (-) | 687 | WP_000218018.1 | (d)CMP kinase | - |
| CSB68_RS08455 (CSB68_1706) | - | 1728963..1729406 (-) | 444 | WP_001246675.1 | SRPBCC family protein | - |
| CSB68_RS08460 (CSB68_1707) | tadA | 1729476..1729979 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| CSB68_RS08465 (CSB68_1708) | - | 1729986..1731110 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| CSB68_RS08470 (CSB68_1709) | ung | 1731107..1731820 (-) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| CSB68_RS08475 (CSB68_1710) | - | 1731871..1732467 (-) | 597 | WP_000908455.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| CSB68_RS08480 (CSB68_1711) | gspK | 1732698..1733657 (-) | 960 | WP_000301460.1 | type II secretion system minor pseudopilin GspK | - |
| CSB68_RS08485 (CSB68_1712) | xcpW | 1733657..1734358 (-) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| CSB68_RS08490 (CSB68_1713) | xcpV | 1734358..1734738 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| CSB68_RS08495 (CSB68_1714) | - | 1734728..1735282 (-) | 555 | WP_087933375.1 | type II secretion system protein | - |
| CSB68_RS08500 (CSB68_1715) | - | 1735292..1735900 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| CSB68_RS08505 (CSB68_1716) | - | 1735938..1736711 (-) | 774 | WP_000497304.1 | TatD family hydrolase | - |
| CSB68_RS08510 (CSB68_1717) | - | 1736729..1737070 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| CSB68_RS08515 (CSB68_1718) | - | 1737082..1738062 (-) | 981 | WP_001075408.1 | DNA polymerase III subunit delta' | - |
| CSB68_RS08520 (CSB68_1719) | kdsB | 1738074..1738835 (-) | 762 | WP_000680702.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| CSB68_RS08525 (CSB68_1720) | lpxK | 1738845..1739855 (-) | 1011 | WP_000050449.1 | tetraacyldisaccharide 4'-kinase | - |
| CSB68_RS08530 (CSB68_1721) | msbA | 1739858..1741585 (-) | 1728 | WP_001070727.1 | lipid A export permease/ATP-binding protein MsbA | - |
| CSB68_RS08535 (CSB68_1722) | - | 1741582..1742010 (-) | 429 | WP_000669683.1 | ExbD/TolR family protein | - |
| CSB68_RS08540 (CSB68_1723) | - | 1742026..1742661 (-) | 636 | WP_000264037.1 | MotA/TolQ/ExbB proton channel family protein | - |
| CSB68_RS08545 (CSB68_1724) | - | 1742711..1743598 (-) | 888 | WP_000023429.1 | ParB/RepB/Spo0J family partition protein | - |
| CSB68_RS08550 (CSB68_1725) | - | 1743595..1744377 (-) | 783 | WP_000057212.1 | ParA family protein | - |
Sequence
Protein
Download Length: 233 a.a. Molecular weight: 26613.59 Da Isoelectric Point: 9.5501
>NTDB_id=275560 CSB68_RS08485 WP_000594572.1 1733657..1734358(-) (xcpW) [Acinetobacter baumannii strain AR_0052]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS
Nucleotide
Download Length: 702 bp
>NTDB_id=275560 CSB68_RS08485 WP_000594572.1 1733657..1734358(-) (xcpW) [Acinetobacter baumannii strain AR_0052]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpW | Acinetobacter baumannii D1279779 |
99.142 |
100 |
0.991 |