Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C5695_RS08155 Genome accession   NZ_CP027116
Coordinates   1603611..1604390 (+) Length   259 a.a.
NCBI ID   WP_117730294.1    Uniprot ID   A0AAD0HMQ5
Organism   Bacillus pumilus strain 145     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598611..1609390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS08135 (C5695_08140) trmFO 1599315..1600619 (+) 1305 WP_117730290.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C5695_RS08140 (C5695_08145) xerC 1600682..1601599 (+) 918 WP_117730291.1 tyrosine recombinase XerC -
  C5695_RS08145 (C5695_08150) hslV 1601614..1602159 (+) 546 WP_117730292.1 ATP-dependent protease subunit HslV -
  C5695_RS08150 (C5695_08155) hslU 1602176..1603576 (+) 1401 WP_117730293.1 HslU--HslV peptidase ATPase subunit -
  C5695_RS08155 (C5695_08160) codY 1603611..1604390 (+) 780 WP_117730294.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C5695_RS08160 (C5695_08165) flgB 1604679..1605068 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  C5695_RS08165 (C5695_08170) flgC 1605068..1605520 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  C5695_RS08170 (C5695_08175) fliE 1605532..1605849 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  C5695_RS08175 (C5695_08180) fliF 1605899..1607491 (+) 1593 WP_117730295.1 flagellar basal-body MS-ring/collar protein FliF -
  C5695_RS08180 (C5695_08185) fliG 1607503..1608519 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  C5695_RS08185 (C5695_08190) fliH 1608512..1609276 (+) 765 WP_117730296.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29030.29 Da        Isoelectric Point: 4.6614

>NTDB_id=275052 C5695_RS08155 WP_117730294.1 1603611..1604390(+) (codY) [Bacillus pumilus strain 145]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=275052 C5695_RS08155 WP_117730294.1 1603611..1604390(+) (codY) [Bacillus pumilus strain 145]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTGTTAAGTAGAAGAGGGAAACTACTAGGCTACTCGATTA
ACCAACAGATTGAAAATCCACGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATACACAAAGAGTCTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATTAACAGTGAATATACAGCTTTTCCGATTGAGAACCGTGACTTATTCGA
ATCAGGTTTGACAACAATTGTCCCAATTATCGGCGGAGGAGATCGTTTAGGAACGTTAATCTTGTCTCGTTTGCAAGATA
CTTTCAAAGACGATGATTTGATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGCGAGAAAGCAGAG
GAGATCGAAGAAGAAGCAAGAAGTAAAGCCGTTGTCCAAATGGCGATTAGTTCTCTCTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTCGAAGAACTTGATGGCAATGAAGGGCTACTTGTCGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.139

100

0.961
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467

Multiple sequence alignment