Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C5I45_RS11425 Genome accession   NZ_CP027061
Coordinates   2304194..2304973 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. ZY-1-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2299194..2309973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS11395 (C5I45_11385) fliH 2299238..2299993 (-) 756 WP_025851275.1 flagellar assembly protein FliH -
  C5I45_RS11400 (C5I45_11390) fliG 2299986..2301002 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  C5I45_RS11405 (C5I45_11395) fliF 2301015..2302625 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  C5I45_RS11410 (C5I45_11400) fliE 2302668..2302988 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  C5I45_RS11415 (C5I45_11405) flgC 2302999..2303451 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  C5I45_RS11420 (C5I45_11410) flgB 2303451..2303840 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  C5I45_RS11425 (C5I45_11415) codY 2304194..2304973 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C5I45_RS11430 (C5I45_11420) hslU 2305011..2306423 (-) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  C5I45_RS11435 (C5I45_11425) hslV 2306431..2306976 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  C5I45_RS11440 (C5I45_11430) xerC 2306992..2307909 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  C5I45_RS11445 (C5I45_11435) trmFO 2307979..2309286 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=274820 C5I45_RS11425 WP_003154263.1 2304194..2304973(-) (codY) [Bacillus sp. ZY-1-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=274820 C5I45_RS11425 WP_003154263.1 2304194..2304973(-) (codY) [Bacillus sp. ZY-1-1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment