Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D2M30_RS04075 Genome accession   NZ_CP032146
Coordinates   807015..808832 (+) Length   605 a.a.
NCBI ID   WP_125122243.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 802015..813832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS04065 (D2M30_04065) - 802702..805029 (+) 2328 WP_125122241.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  D2M30_RS04070 (D2M30_04070) - 805301..807034 (+) 1734 WP_125122242.1 ABC transporter ATP-binding protein -
  D2M30_RS04075 (D2M30_04075) rcrQ 807015..808832 (+) 1818 WP_125122243.1 ABC transporter ATP-binding protein Regulator
  D2M30_RS04080 (D2M30_04080) - 808999..809403 (+) 405 WP_013351420.1 DoxX family protein -
  D2M30_RS04085 (D2M30_04085) - 809420..810277 (+) 858 WP_125122244.1 VOC family protein -
  D2M30_RS04090 (D2M30_04090) cyoE 810565..811512 (+) 948 WP_125122245.1 heme o synthase -
  D2M30_RS04095 (D2M30_04095) - 811550..812101 (-) 552 WP_125122246.1 PadR family transcriptional regulator -
  D2M30_RS04100 (D2M30_04100) - 812350..812952 (+) 603 WP_125122247.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67563.39 Da        Isoelectric Point: 9.7082

>NTDB_id=274782 D2M30_RS04075 WP_125122243.1 807015..808832(+) (rcrQ) [Bacillus amyloliquefaciens strain YP6]
MQKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLSLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
RTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMFLSIKWITSRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALKSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHALYQPIKTGKIEFRDVSFGYQEDSLILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNEGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDLEVEEAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=274782 D2M30_RS04075 WP_125122243.1 807015..808832(+) (rcrQ) [Bacillus amyloliquefaciens strain YP6]
GTGCAGAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCGAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGGATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTGTCCCTCGTGATCA
TCATGGTAGTCATAAGCGCCATATTTGGCCTCCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTCATCGTCGGG
CGGACGACAGACGGATTGGCGGGGGTGCTGTTCATACTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATTTCTCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACTCATCTGCATGAACTGC
CGATTCCATTTTTTGATAAACAGCGGCTCGGCGACTTGATGAGCCGGGTCACCAATGATATTGAAAATGTCAGCTCCACT
TTAAATACATCAGTCATTCAGGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGCCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGTTTTTGAGCATCAAATGGATCACCAGCCGGACGGGACTGC
TCTTTAAGCAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGTGCGAAGGTCATTAAA
GCCTACTCGAGGGAAGACCGCGTCATGGAGCAATTTTTAGAAAAAAACGCGGCGTTAAAATCATCGGGATTTTGGGCGCA
GACCATTTCGGGATTCATTCCGAAAGTAATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAAGGGTGGATTTCAATCGGTTCCATCGTCGTATTCGCCGAATACTCACGGCAGTTCACGCGCCCTCTG
AATGATTTAGCAAATCAGTTCAACACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAGGAGCGGGAAGACGAAGAGCATGCGCTGTACCAGCCGATCAAAACAGGAAAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCTGATCTTAAAACATCTGTCCTTCAGCGTTCCGAAAGGACAGTCAATCGCCTTTGTCGGCCCG
ACCGGAGCGGGTAAAACAACCGTCACAAGTCTGATCGCCCGCTTTTACGAGCCGAATGAAGGGAAAATTCTTATCGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAATATGGGGTTTGTCCTGCAGGATTCATTTCTTTTTCAGG
GCACCATCAGGGAAAATATCCGCTACGGCCGCTTGGATGCATCTGACCTAGAGGTGGAGGAAGCCGCTAAAGCCGCCAAT
GCCCACGGATTCATTGAACGGCTCCCCAAAGGCTACGATACCGTTCTTACCCAAAACGGCGCGGGTATCAGCCAAGGACA
AAAACAGCTCATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTTCTGCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCCCACAGG
CTGAATACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGTTTTTACCGGGAATTATATGAAAGCCAGTTCAGGGAATCATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(50-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372