Detailed information NTG0274657

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: C5Y82_RS12395
• Genome accession: NZ_CP027034
• Coordinates: 2411967..2414351 (-)
• Length: 794 a.a.
• NCBI ID: WP_119125181.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain 150a
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2406967..2419351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5Y82_RS12355 (C5Y82_12355)	-	2407840..2408568 (+)	729	WP_012010718.1	amino acid ABC transporter ATP-binding protein	-
C5Y82_RS12360 (C5Y82_12360)	-	2408582..2409391 (+)	810	WP_012010719.1	transporter substrate-binding domain-containing protein	-
C5Y82_RS12365 (C5Y82_12365)	-	2409463..2410116 (+)	654	WP_119125178.1	amino acid ABC transporter permease	-
C5Y82_RS12370 (C5Y82_12370)	-	2410132..2410782 (+)	651	WP_119125179.1	amino acid ABC transporter permease	-
C5Y82_RS12380 (C5Y82_12380)	-	2411016..2411147 (-)	132	WP_003216198.1	YrzQ family protein	-
C5Y82_RS12385 (C5Y82_12385)	-	2411168..2411359 (-)	192	WP_003216308.1	hypothetical protein	-
C5Y82_RS12390 (C5Y82_12390)	-	2411373..2411831 (-)	459	WP_236832313.1	prc-barrel domain-containing protein	-
C5Y82_RS12395 (C5Y82_12395)	recD2	2411967..2414351 (-)	2385	WP_119125181.1	ATP-dependent RecD-like DNA helicase	Machinery gene
C5Y82_RS12400 (C5Y82_12400)	-	2414371..2415024 (-)	654	WP_088003250.1	tetratricopeptide repeat protein	-
C5Y82_RS12405 (C5Y82_12405)	mnmA	2415085..2416203 (-)	1119	WP_003216305.1	tRNA 2-thiouridine(34) synthase MnmA	-
C5Y82_RS12410 (C5Y82_12410)	-	2416299..2417441 (-)	1143	WP_012010725.1	cysteine desulfurase family protein	-
C5Y82_RS12415 (C5Y82_12415)	-	2417460..2417879 (-)	420	WP_012010726.1	Rrf2 family transcriptional regulator	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 88952.45 Da
• Isoelectric Point: 5.1611

>NTDB_id=274657 C5Y82_RS12395 WP_119125181.1 2411967..2414351(-) (recD2) [Bacillus pumilus strain 150a]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGKLGSETLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGSDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVADQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDDEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTEEVMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=274657 C5Y82_RS12395 WP_119125181.1 2411967..2414351(-) (recD2) [Bacillus pumilus strain 150a]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCATTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATATTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAGGAAACTTACACCTTCTATGGCAAAGTTACAAGCCATCCGAAGTTTGGTGAA
CAGTTTCAGGCGACTCATTTTCAAAAGGAAGTACCGACAACAAAACAAGGAATAATCCATTATCTTTCAAGTGATTTATT
TGAGGGGATAGGCAAAAAGACAGCGGAAGAAATTGTAGGAAAGCTTGGCAGTGAGACGCTTCATAAAATTATGCGTGACC
CAGCGGTTTTGTATGACGTTCCGCGCTTATCAAAAAAGAAGGCTGATAAGCTGGCTGCAGCGCTCCAAGAGCATCAAGGA
TTGGAACAAATTATGATCAGCTTGAATCAATACGGCTTTGGTCCGCAGCTCAGCATGAAGATTTATCAAGTGTACGAAAG
TGAGACGCTGCAGAAGATTGAAGAAAACCCGTATCAGCTCGTCAAGGATGTTGAAGGGATCGGATTTATTAAGGCAGATG
AACTTGGCGCTAGAACCGGCATCTCAGGAAGTGACCCAGAGCGAATTCGTGCAGCCTTGCTTTATACAGTGGAGACAGCC
AGTCTTCAGGACGGTCATACGTACATACAAACAAAGGATTTGATCGTCGAAACCCGAAAACTGCTCAATCAAACAGGCAA
TGAGTACAAAGTGACGGAAATGGACGTCGCCGATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAGGATG
AGCGCTGCTATCATCCGTCCTTATTTTATGCCGAGCAAAGTGTCGCGAAACGTATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTTCTAGCCCTTGGTGAGCTAGAGGAACGGCTGGGCGTCCAATATGCGCC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCAATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAGACAA
CAGTCATTAAAGGGATTGTTGAGCTTTACAGCGATCTTCATGGTGTATCACTTGACCCAAGTGATTATAAAAAGGATGAA
TCCTTCCCATTTGTGCTTGCGGCACCAACTGGGCGAGCAGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTGAC
GATTCACCGGCTGCTTGGTTGGAACGGATCAGAAGGATTTTCTCATGATGATGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTAGATATTTGGCTTGCGAATCATTTGTTTAAAGCCATTCCTGACCATATACAAGTGATC
ATGGTGGGGGATGAACATCAGCTTCCGTCTGTCGGACCAGGCCAGGTGTTAAGAGACTTGCTTGCATCACAAGCCGTGCC
AGCGGTTACCCTAACAGATATTTACCGGCAGGCAGACGGCTCCAGCATTGTTGAACTTGCACATGATATGAAAAATGGTG
TCCTGCCAAAGGATATTACCGCACGTTCAAAGGATCGATCTTTCATCAAATGCTCAGCTGATCAAATGAAAGAAGTGATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCTAAAGATATTCAAGTGCTTGCGCCCATGTATAAAGGAAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTTGAATCCTAAAAAACCAAAAGGTCGAGAAATTCCTTTTG
GTGATGTGGTGTACCGGACTGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCAGAGAACAATATTTTTAACGGTGATATT
GGCGAAATTGTCTCCATTTTTTATGCGAAAGAAAACACAGAAAAAGAAGATATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACTTTTACTAAAAAGGATTTTCATCAATTTACACATGCCTATTGTTGCTCTATCCACAAATCACAAGGCAGTGAAT
TCCCTATCGTTGTACTACCAGTCGTGAGAAGTTATTACAGAATGCTTCGGCGAAATTTGCTGTACACAGCCATTACACGA
AGTAAAAAGTTTTTAATTCTGTGCGGCGAGGAATCAGCACTGGAGTGGGGCGTGAAAAACAATGAGGATTCCCTCAGACA
AACGTCCTTAACGATGCGGCTCGTGCAAACCGAAGAGGTTATGGATGCGGAGCTTGCAGCACTTCAAAAAGAACTGCCGT
TTAGCGTGCATGATGCAAATATCGGTATGGAGGGAATCACTCCATTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• AAA domain (AAA_30) (345-553)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80.025	100	0.802