Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C5Y82_RS07715 Genome accession   NZ_CP027034
Coordinates   1543003..1543782 (+) Length   259 a.a.
NCBI ID   WP_012009951.1    Uniprot ID   A8FD81
Organism   Bacillus pumilus strain 150a     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1538003..1548782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS07695 (C5Y82_07695) trmFO 1538707..1540011 (+) 1305 WP_119124845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C5Y82_RS07700 (C5Y82_07700) xerC 1540074..1540991 (+) 918 WP_119124846.1 tyrosine recombinase XerC -
  C5Y82_RS07705 (C5Y82_07705) hslV 1541006..1541551 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  C5Y82_RS07710 (C5Y82_07710) hslU 1541568..1542968 (+) 1401 WP_119124847.1 HslU--HslV peptidase ATPase subunit -
  C5Y82_RS07715 (C5Y82_07715) codY 1543003..1543782 (+) 780 WP_012009951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C5Y82_RS07720 (C5Y82_07720) flgB 1544069..1544458 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  C5Y82_RS07725 (C5Y82_07725) flgC 1544458..1544910 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  C5Y82_RS07730 (C5Y82_07730) fliE 1544922..1545239 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  C5Y82_RS07735 (C5Y82_07735) fliF 1545289..1546881 (+) 1593 WP_012009954.1 flagellar basal-body MS-ring/collar protein FliF -
  C5Y82_RS07740 (C5Y82_07740) fliG 1546893..1547909 (+) 1017 WP_012009955.1 flagellar motor switch protein FliG -
  C5Y82_RS07745 (C5Y82_07745) fliH 1547902..1548666 (+) 765 WP_012009956.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29044.31 Da        Isoelectric Point: 4.6614

>NTDB_id=274645 C5Y82_RS07715 WP_012009951.1 1543003..1543782(+) (codY) [Bacillus pumilus strain 150a]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=274645 C5Y82_RS07715 WP_012009951.1 1543003..1543782(+) (codY) [Bacillus pumilus strain 150a]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACGATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATTCTGTCTCGTTTGCAAGATA
CATTTAAAGACGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAAATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCAATTAGTTCTCTATCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCACGCTCTCTTGGAATGAAGGGAACA
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FD81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.753

100

0.958
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment