Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC77_RS14860 Genome accession   NZ_CP027030
Coordinates   3031006..3031716 (+) Length   236 a.a.
NCBI ID   WP_131070084.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_077     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3026006..3036716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC77_RS14840 (FORC77_2742) greB 3026417..3026899 (-) 483 WP_013572566.1 transcription elongation factor GreB -
  FORC77_RS14845 (FORC77_2743) - 3027135..3029459 (+) 2325 WP_131070083.1 Tex family protein -
  FORC77_RS14850 (FORC77_2744) - 3029542..3030012 (-) 471 WP_011078928.1 hypothetical protein -
  FORC77_RS14855 (FORC77_2745) bioH 3030150..3030917 (-) 768 WP_043877025.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC77_RS14860 comF 3031006..3031716 (+) 711 WP_131070084.1 ComF family protein Machinery gene
  FORC77_RS14865 (FORC77_2747) nfuA 3031847..3032431 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  FORC77_RS14870 (FORC77_2748) nudE 3032547..3033101 (+) 555 WP_017789546.1 ADP compounds hydrolase NudE -
  FORC77_RS14875 (FORC77_2749) cysQ 3033116..3033943 (+) 828 WP_045623813.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC77_RS14880 (FORC77_2750) - 3034070..3034831 (-) 762 WP_011078934.1 type II secretion system protein N -
  FORC77_RS14885 (FORC77_2751) - 3034833..3035324 (-) 492 WP_011078935.1 type II secretion system protein M -
  FORC77_RS14890 (FORC77_2752) gspL 3035332..3036531 (-) 1200 WP_043920924.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27207.96 Da        Isoelectric Point: 9.6772

>NTDB_id=274609 FORC77_RS14860 WP_131070084.1 3031006..3031716(+) (comF) [Vibrio vulnificus strain FORC_077]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCLHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPTHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=274609 FORC77_RS14860 WP_131070084.1 3031006..3031716(+) (comF) [Vibrio vulnificus strain FORC_077]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCTGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCACAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTATTGCCTCACGCCGTAT
CGCTTTCCAGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCGTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAGTGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGGAGATTAAATCGCCCATTCCTTGCTCACGCGTTTACTCGTTTATTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TTTACCCCATGCGATTCCCACGCACGTCGCGATTGTCGATGATGTGGTCACGACGGGTAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment