Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMCC_RS05900 Genome accession   NC_010120
Coordinates   1105122..1105739 (-) Length   205 a.a.
NCBI ID   WP_002232485.1    Uniprot ID   A9LZB7
Organism   Neisseria meningitidis 053442     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100122..1110739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS05875 (NMCC_1114) recD 1100837..1102582 (-) 1746 WP_012221673.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMCC_RS05880 (NMCC_1115) lolD 1102649..1103344 (-) 696 WP_017628992.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMCC_RS05885 (NMCC_1116) - 1103337..1104584 (-) 1248 WP_002213503.1 lipoprotein-releasing ABC transporter permease subunit -
  NMCC_RS05895 (NMCC_1117) - 1104788..1105066 (+) 279 WP_002213502.1 hypothetical protein -
  NMCC_RS05900 (NMCC_1118) recR 1105122..1105739 (-) 618 WP_002232485.1 recombination mediator RecR Machinery gene
  NMCC_RS05905 (NMCC_1119) - 1105806..1107344 (-) 1539 WP_012221676.1 SurA N-terminal domain-containing protein -
  NMCC_RS05910 (NMCC_1121) - 1107424..1107777 (-) 354 WP_002227306.1 arsenate reductase -
  NMCC_RS05915 (NMCC_1120) - 1107927..1109555 (+) 1629 WP_017628990.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22332.71 Da        Isoelectric Point: 6.3742

>NTDB_id=27454 NMCC_RS05900 WP_002232485.1 1105122..1105739(-) (recR) [Neisseria meningitidis 053442]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVHHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=27454 NMCC_RS05900 WP_002232485.1 1105122..1105739(-) (recR) [Neisseria meningitidis 053442]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTCACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATCCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A9LZB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.191

97.073

0.371