Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Blongum51A_RS09910 Genome accession   NZ_CP026999
Coordinates   2219429..2221300 (-) Length   623 a.a.
NCBI ID   WP_032682915.1    Uniprot ID   -
Organism   Bifidobacterium longum strain 51A     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2221487..2245687 2219429..2221300 flank 187


Gene organization within MGE regions


Location: 2219429..2245687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Blongum51A_RS09910 (Blongum51A_1749) rcrP 2219429..2221300 (-) 1872 WP_032682915.1 ABC transporter ATP-binding protein Regulator
  Blongum51A_RS09920 (Blongum51A_1750) - 2221487..2222008 (-) 522 WP_022527937.1 MarR family winged helix-turn-helix transcriptional regulator -
  Blongum51A_RS09925 (Blongum51A_1751) - 2222370..2222933 (+) 564 WP_021975086.1 BRO family protein -
  Blongum51A_RS09930 (Blongum51A_1752) - 2223429..2226533 (-) 3105 WP_367643791.1 bacterial Ig-like domain-containing protein -
  Blongum51A_RS11090 - 2226838..2226903 (-) 66 WP_349816200.1 hypothetical protein -
  Blongum51A_RS09935 (Blongum51A_1753) - 2227478..2232019 (-) 4542 WP_131275567.1 exo-beta-1,6-galactobiohydrolase -
  Blongum51A_RS09940 (Blongum51A_1754) - 2232323..2233819 (-) 1497 WP_007052945.1 RNA-binding domain-containing protein -
  Blongum51A_RS09945 (Blongum51A_1755) - 2234159..2235682 (-) 1524 WP_007057470.1 amino acid permease -
  Blongum51A_RS09950 (Blongum51A_1756) - 2235870..2239553 (-) 3684 WP_169051315.1 FtsX-like permease family protein -
  Blongum51A_RS09955 (Blongum51A_1757) - 2239642..2240343 (-) 702 WP_032734949.1 ABC transporter ATP-binding protein -
  Blongum51A_RS09960 (Blongum51A_1758) - 2240487..2241056 (+) 570 WP_032734948.1 TetR/AcrR family transcriptional regulator -
  Blongum51A_RS09965 (Blongum51A_1759) - 2241278..2242753 (+) 1476 WP_011068639.1 amino acid permease -
  Blongum51A_RS09970 (Blongum51A_1760) - 2242816..2244228 (-) 1413 WP_013141475.1 ATP-binding protein -
  Blongum51A_RS09975 (Blongum51A_1761) - 2244370..2244645 (-) 276 Protein_1859 transposase -
  Blongum51A_RS09980 (Blongum51A_1762) - 2244626..2245687 (+) 1062 WP_256868749.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68027.54 Da        Isoelectric Point: 5.1937

>NTDB_id=274394 Blongum51A_RS09910 WP_032682915.1 2219429..2221300(-) (rcrP) [Bifidobacterium longum strain 51A]
MFRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKVMQTLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGKAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=274394 Blongum51A_RS09910 WP_032682915.1 2219429..2221300(-) (rcrP) [Bifidobacterium longum strain 51A]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGTGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCAGCCGAGATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGTTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAGTTCAAGGTCATGCA
GACCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGAGACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGTTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCTTACCTCATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACTGAG
CCAATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCAAGGCTGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-543)

ABC transporter transmembrane region (ABC_membrane)

(54-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.657

100

0.494

Multiple sequence alignment