Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D2E16_RS05445 Genome accession   NZ_CP032064
Coordinates   1107661..1109403 (+) Length   580 a.a.
NCBI ID   WP_192369487.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102661..1114403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS05425 (D2E16_05540) - 1103230..1104048 (+) 819 WP_002935241.1 NAD kinase -
  D2E16_RS05430 (D2E16_05545) - 1104048..1104941 (+) 894 WP_125183292.1 RluA family pseudouridine synthase -
  D2E16_RS05435 (D2E16_05550) pta 1104959..1105933 (+) 975 WP_002935239.1 phosphate acetyltransferase -
  D2E16_RS05440 (D2E16_05555) - 1105935..1107674 (+) 1740 WP_192369488.1 ABC transporter ATP-binding protein -
  D2E16_RS05445 (D2E16_05560) rcrQ 1107661..1109403 (+) 1743 WP_192369487.1 ABC transporter ATP-binding protein Regulator
  D2E16_RS05450 (D2E16_05565) - 1109387..1109779 (+) 393 WP_029694686.1 PaaI family thioesterase -
  D2E16_RS05455 (D2E16_05570) mutY 1109945..1111104 (+) 1160 Protein_1032 A/G-specific adenine glycosylase -
  D2E16_RS05460 (D2E16_05575) - 1111787..1112587 (-) 801 WP_099807149.1 helix-turn-helix domain-containing protein -
  D2E16_RS05465 (D2E16_05580) - 1112812..1113354 (+) 543 WP_024376577.1 hypothetical protein -
  D2E16_RS05470 (D2E16_05585) - 1113822..1114142 (-) 321 WP_032498302.1 membrane protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64439.52 Da        Isoelectric Point: 5.5090

>NTDB_id=274181 D2E16_RS05445 WP_192369487.1 1107661..1109403(+) (rcrQ) [Streptococcus suis strain YSJ17]
MRQASFKELVRLVLHQPHRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGILGKMVMAILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LVVVALTPVSLLVARYIAKKSYGYYRQQTQARGKQSQLLEESISQLTLVQSFNAQEQFTQGFQVVNNQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFDNVSFSYSPDRSLIEHLDIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIVLDGIPI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=274181 D2E16_RS05445 WP_192369487.1 1107661..1109403(+) (rcrQ) [Streptococcus suis strain YSJ17]
ATGAGACAAGCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACACCAACCCCATCGAATGTCCTTGATGTTGGTGGGAAC
TTTAGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTCGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTGATGGCTATCTTGCTTAATACGCTGGTGCAATGGTATCTCCCACTAGTA
ACCAATCGCTTGGTTTATGGAATGGTGGCCGACTTGCGTGAACAGGTTTATGTGAAGCTGCACCAGATGCCCCTATCTTA
TCTGGATCGTCAATCAGTCGGTGATTTGGTGGCTCGTTTTTCAAGTGATAGTGAGCAATTAACAAATGGACTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTCTTAACCATTTTCACTATGGCTAGGCTTGACTTGACCATGATG
TTGGTTGTTGTTGCCCTGACTCCCGTGTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGGCA
ACAGACTCAGGCACGTGGGAAGCAATCTCAGCTTTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATAATCAGTATGCGACCTATTCTCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGCACGCGGTTTATTAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGCTCTCTGACAACTTTTCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCTTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTCTAGATAGCATTGAC
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGATAATGTGTCTTTCTCCTATAGTCC
TGACCGTTCTCTGATAGAACATTTGGACATTGATGTCAAAGCTGGACAAAAAGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATCAATCTTCTCATGCGTTTCTACGATGTGACGGCTGGTCAGATTGTCTTAGATGGGATTCCGATT
AGCCAGTACAGTCGTGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAGCTTCCGCAGGGGTACGATACAGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTCAAGATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGTACCAGTTTTATTATTGCTCATCGCCTGTCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.801

97.759

0.379