Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   D2E16_RS02745 Genome accession   NZ_CP032064
Coordinates   551891..552625 (+) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis strain YSJ17     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 546891..557625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS02720 (D2E16_02810) - 547390..547698 (-) 309 WP_002938710.1 DUF1827 family protein -
  D2E16_RS02725 (D2E16_02815) - 547753..548214 (-) 462 WP_192370192.1 NUDIX hydrolase -
  D2E16_RS02730 (D2E16_02820) clpE 548400..550628 (-) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  D2E16_RS02735 (D2E16_02825) - 550852..551082 (+) 231 WP_002938704.1 DUF1797 family protein -
  D2E16_RS02740 (D2E16_02830) - 551209..551898 (+) 690 WP_044691021.1 amino acid ABC transporter permease -
  D2E16_RS02745 (D2E16_02835) amiE 551891..552625 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  D2E16_RS02750 (D2E16_02840) - 552859..553707 (+) 849 WP_024375752.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  D2E16_RS02755 (D2E16_02845) - 553919..555208 (-) 1290 WP_194472458.1 IS4 family transposase -
  D2E16_RS02760 (D2E16_02850) - 555451..555603 (+) 153 WP_099870668.1 YSIRK-type signal peptide-containing protein -
  D2E16_RS02765 (D2E16_02855) - 555563..556147 (+) 585 WP_192369106.1 hypothetical protein -
  D2E16_RS02770 (D2E16_02860) - 556144..556875 (+) 732 WP_192369107.1 hypothetical protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=274168 D2E16_RS02745 WP_002943067.1 551891..552625(+) (amiE) [Streptococcus suis strain YSJ17]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=274168 D2E16_RS02745 WP_002943067.1 551891..552625(+) (amiE) [Streptococcus suis strain YSJ17]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCTGGGTCAGGGAAATCGACTTTCTTACGTACAATGAATCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CAAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAACGAATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGATCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTAGC
CAAGTCGGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365