Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D2E16_RS02015 Genome accession   NZ_CP032064
Coordinates   406939..407727 (+) Length   262 a.a.
NCBI ID   WP_004195776.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 401939..412727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS01990 (D2E16_02065) - 402175..403134 (-) 960 WP_192370190.1 asparaginase -
  D2E16_RS12465 - 403204..404569 (+) 1366 Protein_356 Cof-type HAD-IIB family hydrolase -
  D2E16_RS02005 (D2E16_02080) - 404585..405037 (-) 453 WP_024387582.1 universal stress protein -
  D2E16_RS02010 (D2E16_02085) - 405192..406406 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  D2E16_RS02015 (D2E16_02095) codY 406939..407727 (+) 789 WP_004195776.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D2E16_RS02020 (D2E16_02100) - 407729..408280 (+) 552 WP_024376330.1 cysteine hydrolase family protein -
  D2E16_RS02025 (D2E16_02105) - 408997..410160 (-) 1164 WP_194472482.1 IS30 family transposase -
  D2E16_RS02030 (D2E16_02110) rplS 410415..410762 (+) 348 WP_024376329.1 50S ribosomal protein L19 -
  D2E16_RS02035 (D2E16_02115) - 410951..411625 (+) 675 WP_004195780.1 hypothetical protein -
  D2E16_RS02040 (D2E16_02120) gatC 411843..412145 (+) 303 WP_024380028.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29333.38 Da        Isoelectric Point: 4.6797

>NTDB_id=274160 D2E16_RS02015 WP_004195776.1 406939..407727(+) (codY) [Streptococcus suis strain YSJ17]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNNEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=274160 D2E16_RS02015 WP_004195776.1 406939..407727(+) (codY) [Streptococcus suis strain YSJ17]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAATTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATAATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496