Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   D2E16_RS01275 Genome accession   NZ_CP032064
Coordinates   247193..249526 (+) Length   777 a.a.
NCBI ID   WP_192370169.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 242193..254526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS01255 (D2E16_01300) treP 243181..245175 (-) 1995 WP_192370174.1 PTS system trehalose-specific EIIBC component -
  D2E16_RS01260 (D2E16_01305) treR 245409..246122 (+) 714 WP_104929945.1 trehalose operon repressor Regulator
  D2E16_RS01265 (D2E16_01310) - 246180..246491 (+) 312 WP_029177093.1 hypothetical protein -
  D2E16_RS01270 (D2E16_01315) - 246488..247036 (+) 549 WP_192370172.1 CvpA family protein -
  D2E16_RS01275 (D2E16_01320) mutS/mutS2 247193..249526 (+) 2334 WP_192370169.1 endonuclease MutS2 Machinery gene
  D2E16_RS01280 (D2E16_01325) - 249648..251024 (+) 1377 WP_194472478.1 IS1182 family transposase -
  D2E16_RS12455 - 251109..251507 (-) 399 WP_029180393.1 hypothetical protein -
  D2E16_RS01290 (D2E16_01335) - 251733..251960 (+) 228 WP_024376261.1 hypothetical protein -
  D2E16_RS01295 (D2E16_01340) - 251941..252246 (+) 306 WP_044672279.1 hypothetical protein -
  D2E16_RS01300 (D2E16_01345) - 252537..252878 (+) 342 WP_024378069.1 LytTR family DNA-binding domain-containing protein -
  D2E16_RS01305 (D2E16_01350) comE/blpR 252878..253618 (+) 741 WP_024376264.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87567.32 Da        Isoelectric Point: 6.8000

>NTDB_id=274155 D2E16_RS01275 WP_192370169.1 247193..249526(+) (mutS/mutS2) [Streptococcus suis strain YSJ17]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVHRIQQAFDELTDIAQIFVENPYFSLAATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEDISHLRAEER
HEISRILQELSDMLRPHSSIIRNNAWVIGHLDFIRAKHLFARDYKAVVPTISEKQDIALLNVRHPLIAKPVPNDLYFGSQ
LTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVEILRAAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRNVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFDLVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=274155 D2E16_RS01275 WP_192370169.1 247193..249526(+) (mutS/mutS2) [Streptococcus suis strain YSJ17]
ATGAATAATAAGATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTACGACAGTTGGAGCCCATGGTGGAAGTCCACCGTATCCAACAGGCCTTTGACGAGTTGACAGATATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGTCTGGCTGCTACTAGTGACATCGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAGCTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAGGGCTCCC
TCCAGTCCATCAATGATGCTGGTTTTGTAGAGGATTTTGCCTCAGAAAAGCTGGCTCGTATTCGAAGAAAAATCCGTGAA
GCTGAAGATCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACTAAGGGCGACATGCTGTCCGATAGCATTTTGGCAAG
CCGTAATGGACGCAATGTCCTTCCTGTTAAAAATACCTATCGCAATAAGATTGCTGGGGTTGTCCATGACATTTCAGCTT
CGGGTTCGACCGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGATATCAGTCATTTGCGTGCAGAAGAGCGG
CATGAAATCAGTCGGATTTTGCAAGAGTTGTCCGACATGCTGCGACCTCATAGCAGTATTATCCGCAACAATGCCTGGGT
CATTGGGCATTTGGATTTCATCCGCGCCAAACACCTTTTTGCAAGAGATTACAAGGCTGTAGTTCCGACTATTTCGGAGA
AGCAGGATATTGCCCTTCTCAACGTTCGGCATCCTCTCATTGCTAAGCCTGTACCAAATGACCTTTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACGGGTGGTAAGACTATCATGCTCAAGACCTTGGGTTTGACCCATCTGAT
GGCTCAGTCTGGTTTGCCTATCTTGGCTGATAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGATATTGGTG
ATGAACAGTCGATTGAGCAGAGTTTATCAACCTTCTCCAGTCACATGACCCACACGGTGGAAATTTTAAGAGCAGCTGAT
CAAGATTCTCTCATTCTCTTTGACGAGTTGGGAGCGGGGACAGATCCGCAGGAGGGCGCGTCGCTGGCCATGGCTATTCT
GGATGACCTTCGCTTGCGGGGCATCAAGACCATGGCAACTACTCACTACCCTGAGCTCAAGGCTTACGGGATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAATTTGATACCAATAGTCTACGACCAACTTATAAGTTTATGCAGGGTGTTCCTGGT
CGCTCCAATGCCTTTGAAATTGCACGGCGTCTTGGTCTATCTGATATTATTATCCAGTCAGCCCAATCTTGGACGGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAGCGTCTGGATAAGATTCGTA
ATGTGGAGCAAGAAAATTACAAGATGAACCGTGCGCTACGTAAACTCTATGATGAGCTCAATCGTGAGCGGGAAAACGAG
CTCAACAAAGCACGCTTGGAAGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTGAAAAATCTCCA
TGCAGCAGCCAGTCTTAAGCCCCACCAGATTATCGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGGATC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGTGATGACATTATCGTTACAGCCTAT
GGACAACGTGGGACCTTGACCAATCAGCTCAAGGACGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
CAAAGATGAGTTTGACTTAGTCAAGGCGGAAAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCATACAGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCTCGCTTAGATCTCCGTGGCAAACGCTACGAAGAGGCTATGATGGAGCTGGATGAGTTTATC
GACCAAGCTCTGCTCAACAACCTAGCCCAAGTCGATATTGTCCACGGTATCGGTACAGGGGTTATCCGAGAAGGGGTGAC
CAAGTACCTCCGTCGCAACAAGCAGGTCAAGGAATTTGGCTATGCTCCACAAAATGCAGGTGGTTCAGGTTGTACCATTG
TGACCTTTAAGTAA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(702-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)

MutS domain V (MutS_V)

(324-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

40.152

100

0.409