Detailed information NTG0274153

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: D2E16_RS01220
• Genome accession: NZ_CP032064
• Coordinates: 231751..234243 (-)
• Length: 830 a.a.
• NCBI ID: WP_192370134.1
• Uniprot ID: -
• Organism: Streptococcus suis strain YSJ17
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 226751..239243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2E16_RS01190 (D2E16_01225)	-	227101..227730 (+)	630	WP_024409723.1	NAD(P)-dependent oxidoreductase	-
D2E16_RS01195 (D2E16_01230)	-	227827..228747 (+)	921	WP_100881071.1	1-phosphofructokinase family hexose kinase	-
D2E16_RS01200 (D2E16_01235)	-	228733..228975 (-)	243	Protein_203	transposase	-
D2E16_RS12600	-	229190..229261 (+)	72	WP_231640516.1	hypothetical protein	-
D2E16_RS01210 (D2E16_01245)	-	229532..230560 (+)	1029	WP_029175768.1	LPXTG cell wall anchor domain-containing protein	-
D2E16_RS01215 (D2E16_01250)	-	230974..231645 (-)	672	WP_053864585.1	hypothetical protein	-
D2E16_RS01220 (D2E16_01255)	recD/recD2/recDB	231751..234243 (-)	2493	WP_192370134.1	ATP-dependent RecD-like DNA helicase	Machinery gene
D2E16_RS01225 (D2E16_01260)	lepB	234308..234937 (-)	630	WP_192370137.1	signal peptidase I	-
D2E16_RS01230 (D2E16_01265)	rnhC	234948..235838 (-)	891	WP_192370139.1	ribonuclease HIII	-
D2E16_RS01235 (D2E16_01270)	-	235923..236906 (+)	984	WP_192370141.1	Gfo/Idh/MocA family protein	-
D2E16_RS01240 (D2E16_01275)	-	237394..238812 (+)	1419	WP_192374342.1	LysM peptidoglycan-binding domain-containing protein	-

Sequence

Protein

• Length: 830 a.a.
• Molecular weight: 93295.49 Da
• Isoelectric Point: 4.5615

>NTDB_id=274153 D2E16_RS01220 WP_192370134.1 231751..234243(-) (recD/recD2/recDB) [Streptococcus suis strain YSJ17]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYEDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSDHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKTMQAFVEKLRLNYGTELILAKLAEY
GIPNKLVFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAHELSGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFRDKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKDALSEKAESKTATTTQTHPPTQPDRKEQVDAVKENNQQLSLLDQDQPEKTNFQPT
EYILTVDNLLTIDPMIGIEQADIEEFFRKI

Nucleotide

• Length: 2493 bp

>NTDB_id=274153 D2E16_RS01220 WP_192370134.1 231751..234243(-) (recD/recD2/recDB) [Streptococcus suis strain YSJ17]
ATGAATGAAGTTTATTTTACCGGCACCATTGACCGGATTATTTTTGAAAATCCTAGCAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAAACTGACGCAGACTATGAAGACTACGAGATTATCGTAACAGGAACGATTGCCGACGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCACGCTACGAACGTAGC
AAGCCCACTTCTGCCGGACTTGTCAAGTATTTCTCCAGCGATCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGACACCATCGACAAAATTTTAGCTGAGCCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGACCATGCAGGCATTTGTAGAGAAACTCCGCCTCAATTATGGCACCGAGCTGATCTTGGCAAAACTAGCCGAGTAT
GGTATTCCAAATAAATTGGTCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGACAGGATTGCGGAAAATCTGGGAATTGCCAGTGATT
CACCCCAACGTTTTCGAGCAGGTATGCTCTTTAGCCTTATCCATCGTTCCATGGAAACAGGCGATACCTACGTAGAAGCT
AGAGATTTGCTGGAAGCTACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAACTAGACCCTGCCGCAGTCGCCCACGA
GTTGTCGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACTTGACCCGCCTGATGGGAAAAAATGGCTTCAAGCCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAAGTATGTCCTCCCTTACCTACGATGACATTCAAAAAGAAGCCATTGTCCAAGCCATTACCAATCC
ACTATTCATTCTGACAGGCGGACCAGGAACTGGAAAGACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTAACGCGTAACCGAGAAGAATGCCCTGTCCTCCTTGCCGCTCCAACCGGACGAGCAGCCAGACGGATG
AATGAACTGACAGGCCTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTAGTAGAAGGACAAGAAGAATCCTACCGGGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTCGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAGACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCATCTGTCAGTCCCGGTCAGGTCCTAGCT
GACCTCTTGAAAATTGACAAGCTACCCAGCATCACTCTGGAACGCATCTACCGCCAATCCGATGATTCGACTATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGAGCTCTACCTAGCGATTTCCGTGACAAAAAGGCTGACCGTTCCTATTTTGAAGCCC
AAAACGAACAAATTCCAGCTCTGATTGAACGCATTGTCGGCGCAGCTATCAAGTCGGGAATTCCTGCAAACGAAGTCCAA
ATCCTCGCTCCCATGTACCGTGGTGCTGCAGGTATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGCGACTTGGGCTATATTACCGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGTAACGAATGGTACAAGATTACCTTGGCCTATGCCATGTC
CATCCACAAGTCCCAGGGCAGTGAGTTCCAAGTCGTCATCCTTCCCATCACGCGCACCAGCCACCGCATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTAGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGCAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGATAGCAAGGATGC
TTTATCTGAAAAAGCCGAAAGCAAAACAGCTACAACCACGCAAACCCACCCCCCTACTCAGCCAGACAGGAAAGAACAGG
TTGACGCAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAATTTCCAACCCACA
GAATACATTTTGACAGTAGATAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
CAGGAAAATATAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_30) (332-529)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (663-710)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (575-645)

• Helix-hairpin-helix domain (HHH_5) (97-145)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.799	91.084	0.381