Detailed information NTG0274093

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: LL267_RS09125
• Genome accession: NZ_CP032058
• Coordinates: 1807426..1809930 (-)
• Length: 834 a.a.
• NCBI ID: WP_003132792.1
• Uniprot ID: Q9CEU4
• Organism: Lactococcus lactis subsp. lactis strain 267
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1802426..1814930

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL267_RS09095 (LL267_1753)	-	1802947..1803138 (-)	192	WP_023164457.1	helix-turn-helix domain-containing protein	-
LL267_RS09100 (LL267_1754)	-	1803279..1803776 (+)	498	WP_058221750.1	helix-turn-helix domain-containing protein	-
LL267_RS09105 (LL267_1755)	-	1803851..1805056 (+)	1206	WP_058221751.1	site-specific integrase	-
LL267_RS09110 (LL267_1756)	-	1805183..1806097 (-)	915	WP_003132796.1	diacylglycerol kinase family protein	-
LL267_RS09115 (LL267_1757)	-	1806254..1806766 (-)	513	WP_003132795.1	HD domain-containing protein	-
LL267_RS09120 (LL267_1758)	rpsT	1807099..1807332 (+)	234	WP_010906113.1	30S ribosomal protein S20	-
LL267_RS09125 (LL267_1759)	recD/recD2/recDB	1807426..1809930 (-)	2505	WP_003132792.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LL267_RS09130 (LL267_1760)	-	1809927..1810520 (-)	594	WP_058221752.1	histidine phosphatase family protein	-
LL267_RS09135 (LL267_1761)	pheA	1810523..1811362 (-)	840	WP_014570689.1	prephenate dehydratase	-
LL267_RS09140 (LL267_1762)	-	1811364..1811852 (-)	489	WP_003132788.1	shikimate kinase	-
LL267_RS09145 (LL267_1763)	aroA	1811876..1813168 (-)	1293	WP_003132786.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
LL267_RS09150 (LL267_1764)	-	1813289..1814353 (-)	1065	WP_058221753.1	prephenate dehydrogenase	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 92974.43 Da
• Isoelectric Point: 4.5085

>NTDB_id=274093 LL267_RS09125 WP_003132792.1 1807426..1809930(-) (recD/recD2/recDB) [Lactococcus lactis subsp. lactis strain 267]
MIEKTYFTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFYGQLTQHPKYGEQLQVSQYEK
AVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDSILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEY
GLPSKITFQIYELYKEETIEKIEENPYQLVEDVKGVGFKTADKIASSLGIEADSPNRFRAALMHEVNTHSQSTGDTYIEA
KNLLEMTIDLLEEARNVEVNPSAVAEEINGLIVDGKVQQEGTKIFENSLYFAEDGIRKSLTALTNRSGKDFADEKLLTVL
AEVERDLEITYDDLQKQAIIGAMNQQFFILTGGPGTGKTTIINGFIETYARLHQLDLDPDHYNDDVFPILLAAPTGRASR
RMNELTGLPAATIHRHLGLGQDEAEDALGNELSGALLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPSDFTAKKPDRSYFEVSANFVPQMVEQIASAWQKRGNNPFE
LQILAPMYKGMAGINAMNVLLQNLFNPLNDRLEFALGDMKFREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQD
ELVMDFDGQELTYPRAEWYKITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
VAREGANRKTYLIERFMGENPAAKNLSVEIVSEKVTDKKERSDKEKKPAAPVELQGQIRSVSKKMPAQVEEISLFEDEEI
ETLDKGSLTEALILSGNFDPLIGLTQQDFAIFNK

Nucleotide

• Length: 2505 bp

>NTDB_id=274093 LL267_RS09125 WP_003132792.1 1807426..1809930(-) (recD/recD2/recDB) [Lactococcus lactis subsp. lactis strain 267]
ATGATTGAAAAAACTTATTTTACTGGTTCGATTGAGGCAATATTTTTCTCCAATCCCAGTAATTTTTATAAAGTTCTACT
CATTGAAATTGATGAAACTAATGCTGAATATGATGATTTTGAAATTGTGGTTAACGGGACAATTGGGGATGTGGTTGAAG
GAGATTCTTATACATTTTATGGTCAATTGACGCAACATCCTAAATATGGGGAACAATTACAGGTCAGTCAATATGAAAAA
GCAGTGCCGACTTCTGGTGCTGGTTTAGTTAAATATTTTTCTTCAGATAAATTTCCTGGAATTGGTAAGAAAACGGCAGA
AAAAATTGTTGAAACTTTTCCTGAAAATACGGTAGATTCAATTTTAGAAGCGCCGGAGAAATTGGATGGTCTATTGACCC
TAGCCAGAAAAAATTCATTTATCAAACGATTACGTGAGAATCATGGAATGGAAAAAGTGCTGACCAAGCTTGCAGAATAT
GGCTTACCAAGCAAAATCACTTTTCAAATTTATGAACTTTATAAAGAAGAAACGATTGAAAAAATTGAGGAAAATCCTTA
TCAGCTTGTGGAAGATGTTAAGGGAGTTGGTTTTAAAACAGCTGATAAGATTGCAAGTAGTTTAGGAATTGAAGCGGATA
GCCCTAATCGATTTCGAGCGGCATTGATGCATGAGGTCAATACACATTCGCAATCAACAGGCGATACTTACATTGAAGCC
AAAAATTTACTTGAGATGACGATAGACTTACTTGAAGAAGCTCGTAATGTCGAGGTCAACCCGTCTGCTGTTGCGGAGGA
AATTAATGGTTTAATAGTTGATGGAAAAGTGCAACAAGAAGGAACAAAAATATTTGAGAATTCCTTGTACTTCGCTGAGG
ACGGGATTCGGAAATCACTGACAGCATTAACTAATCGTTCGGGTAAAGATTTTGCTGATGAAAAGTTACTGACAGTATTG
GCTGAAGTTGAAAGAGATTTAGAAATTACTTATGATGATTTGCAAAAGCAAGCCATTATTGGTGCAATGAATCAGCAATT
TTTCATTTTGACTGGTGGACCAGGAACTGGTAAAACAACAATTATTAATGGTTTTATTGAAACTTATGCCCGTCTTCATC
AGCTAGATTTGGACCCAGACCATTATAATGATGACGTCTTTCCTATATTACTGGCAGCACCGACTGGTCGAGCTTCAAGA
CGGATGAATGAGTTGACTGGTCTTCCAGCAGCGACGATTCACCGCCATTTGGGTTTGGGACAAGATGAAGCAGAAGATGC
TCTTGGAAATGAATTGTCTGGTGCTCTTTTGATTGTTGACGAATTTTCTATGGTTGATACTTGGTTAGCTAATAAACTTT
TTCAAGCGATTCCTGGTTCAATGAAAGTTCTCCTTGTTGGAGATGCTGACCAGCTTCCTTCTGTGGGGCCAGGACAAATT
TTTGCGGATTTACTAAAAATTCCAGAAATTCCGTCAGTAAAATTGGATAAGATTTTTCGTCAAGGGGATGATTCTACCAT
TACTGATTTAGCTCACCACATCAAAGATGGGCAATTGCCAAGTGATTTCACGGCGAAAAAACCTGACCGTTCTTATTTTG
AGGTCAGTGCAAATTTTGTTCCTCAGATGGTTGAACAAATCGCAAGTGCATGGCAAAAAAGAGGGAATAATCCTTTTGAA
TTACAAATCTTAGCGCCTATGTATAAAGGAATGGCCGGAATTAATGCAATGAATGTTCTTTTGCAAAATCTCTTTAATCC
GCTTAATGACCGACTTGAATTTGCTTTGGGTGATATGAAATTTCGTGAAGGAGATAAAGTTCTTCATTTAGTAAATGATG
CTGAGGCCAATGTATTTAACGGAGATTTGGGACAAATCGTAGAATTGATTGCAGCAAAATATACTGATAGTAAACAAGAT
GAGTTGGTGATGGATTTTGATGGTCAAGAATTGACTTATCCAAGAGCGGAGTGGTATAAAATTACTCTGGCTTATGCGAT
GTCCATTCATAAATCTCAAGGTTCGGAGTTTTCCACAGTTATTGTGCCGATGGTTTCTTCGTATTCACGCATGTTAGAGC
GAAATTTGCTTTATACGGCAATTACAAGGGCTAAACAAAGTCTGATTTTACTTGGTGAAGAACGAGCTTTTGCACAAGCG
GTGGCGCGTGAAGGAGCGAATCGAAAGACCTATCTGATTGAGCGATTTATGGGAGAAAATCCAGCGGCTAAAAATCTGTC
AGTAGAAATTGTGAGTGAAAAAGTTACTGACAAAAAAGAAAGATCTGACAAAGAGAAGAAGCCTGCAGCGCCAGTAGAAT
TACAAGGGCAAATTCGTTCTGTCAGTAAAAAAATGCCAGCACAAGTAGAAGAAATTTCTTTATTTGAAGATGAAGAAATT
GAAACACTGGATAAGGGAAGCTTGACAGAAGCACTTATTTTGTCAGGAAATTTTGACCCTTTAATTGGTTTAACTCAACA
AGACTTTGCAATCTTTAATAAATAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (577-646)

• AAA domain (AAA_30) (331-522)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (664-710)

• Helix-hairpin-helix containing domain (HHH_RecD2) (146-237)

3D structure

• AlphaFold DB: Q9CEU4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	42.175	90.408	0.381