Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D1E88_RS05820 Genome accession   NZ_CP031886
Coordinates   1192117..1192887 (+) Length   256 a.a.
NCBI ID   WP_149558546.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN082783     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187117..1197887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1E88_RS05800 (D1E88_05940) trmFO 1187459..1188766 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  D1E88_RS05805 (D1E88_05945) xerC 1189185..1190081 (+) 897 WP_001015604.1 tyrosine recombinase XerC -
  D1E88_RS05810 (D1E88_05950) hslV 1190078..1190623 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  D1E88_RS05815 (D1E88_05955) hslU 1190689..1192092 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  D1E88_RS05820 (D1E88_05960) codY 1192117..1192887 (+) 771 WP_149558546.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D1E88_RS05825 (D1E88_05965) - 1192942..1193034 (+) 93 WP_031785459.1 hypothetical protein -
  D1E88_RS05830 (D1E88_05970) rpsB 1193233..1194000 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  D1E88_RS05835 (D1E88_05975) - 1194034..1194147 (+) 114 WP_001789890.1 hypothetical protein -
  D1E88_RS05840 (D1E88_05980) tsf 1194182..1195063 (+) 882 WP_000201387.1 translation elongation factor Ts -
  D1E88_RS05845 (D1E88_05985) pyrH 1195200..1195922 (+) 723 WP_000057330.1 UMP kinase -
  D1E88_RS05850 (D1E88_05990) frr 1195941..1196495 (+) 555 WP_001280003.1 ribosome recycling factor -
  D1E88_RS05855 (D1E88_05995) - 1196867..1197637 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28640.04 Da        Isoelectric Point: 6.0680

>NTDB_id=272673 D1E88_RS05820 WP_149558546.1 1192117..1192887(+) (codY) [Staphylococcus aureus strain CFSAN082783]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=272673 D1E88_RS05820 WP_149558546.1 1192117..1192887(+) (codY) [Staphylococcus aureus strain CFSAN082783]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.173

99.219

0.637
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.43