Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   D1O36_RS08120 Genome accession   NZ_CP031881
Coordinates   1505264..1506007 (-) Length   247 a.a.
NCBI ID   WP_134973451.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST106     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1500264..1511007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS08090 (D1O36_08120) - 1500535..1501479 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  D1O36_RS08095 (D1O36_08125) sepM 1501564..1502640 (-) 1077 WP_022096499.1 SepM family pheromone-processing serine protease Regulator
  D1O36_RS08100 (D1O36_08130) coaD 1502618..1503115 (-) 498 WP_022096498.1 pantetheine-phosphate adenylyltransferase -
  D1O36_RS08105 (D1O36_08135) rsmD 1503149..1503748 (-) 600 Protein_1519 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D1O36_RS08110 (D1O36_08140) trxB 1503839..1504792 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  D1O36_RS08115 (D1O36_08145) - 1504825..1505049 (-) 225 WP_011226468.1 DUF4059 family protein -
  D1O36_RS08120 (D1O36_08150) amiE 1505264..1506007 (-) 744 WP_134973451.1 amino acid ABC transporter ATP-binding protein Regulator
  D1O36_RS08125 (D1O36_08155) - 1506007..1506753 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  D1O36_RS08130 (D1O36_08160) - 1507147..1507977 (-) 831 WP_134973453.1 transporter substrate-binding domain-containing protein -
  D1O36_RS08135 (D1O36_08165) - 1508486..1508719 (-) 234 WP_065972545.1 hypothetical protein -
  D1O36_RS08140 (D1O36_08170) dinB 1509005..1510108 (-) 1104 WP_011227504.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27739.90 Da        Isoelectric Point: 5.2573

>NTDB_id=272608 D1O36_RS08120 WP_134973451.1 1505264..1506007(-) (amiE) [Streptococcus thermophilus strain ST106]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNLPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=272608 D1O36_RS08120 WP_134973451.1 1505264..1506007(-) (amiE) [Streptococcus thermophilus strain ST106]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACCCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCACTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCTTCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364

Multiple sequence alignment