Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   D1O36_RS02750 Genome accession   NZ_CP031881
Coordinates   498267..500003 (+) Length   578 a.a.
NCBI ID   WP_134973128.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST106     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 493267..505003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS02725 (D1O36_02725) - 493906..494259 (+) 354 WP_014621264.1 hypothetical protein -
  D1O36_RS02730 (D1O36_02730) - 494499..494744 (+) 246 WP_011226962.1 efflux RND transporter periplasmic adaptor subunit -
  D1O36_RS10070 - 494737..494934 (+) 198 WP_024704011.1 hypothetical protein -
  D1O36_RS10545 - 495063..495269 (+) 207 WP_246752685.1 ABC transporter permease -
  D1O36_RS10550 - 495275..495448 (+) 174 WP_014608079.1 hypothetical protein -
  D1O36_RS11150 - 495475..495564 (+) 90 WP_338127643.1 hypothetical protein -
  D1O36_RS10085 - 495561..495776 (+) 216 WP_041827315.1 hypothetical protein -
  D1O36_RS02740 (D1O36_02740) rplJ 496067..496570 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  D1O36_RS02745 (D1O36_02745) rplL 496645..497013 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  D1O36_RS02750 (D1O36_02750) rcrP 498267..500003 (+) 1737 WP_134973128.1 ABC transporter ATP-binding protein Regulator
  D1O36_RS02755 (D1O36_02755) - 500016..501802 (+) 1787 Protein_486 ABC transporter ATP-binding protein -
  D1O36_RS02760 (D1O36_02760) queA 501900..502943 (-) 1044 WP_134973129.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  D1O36_RS02765 (D1O36_02765) - 503093..503794 (+) 702 WP_084826215.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64677.69 Da        Isoelectric Point: 5.8097

>NTDB_id=272565 D1O36_RS02750 WP_134973128.1 498267..500003(+) (rcrP) [Streptococcus thermophilus strain ST106]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSIFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGALAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKAGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGMDVRD
YNLKALRCKIGFIPQKALLFTGTIGENIRYGKENASYEKLNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=272565 D1O36_RS02750 WP_134973128.1 498267..500003(+) (rcrP) [Streptococcus thermophilus strain ST106]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTATCCTAAGTGGCTAGCGATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTATCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATCATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAGCTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCAGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAAACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTATGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTTGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTTATGAAAAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.377

91.696

0.37