Detailed information NTG0272298

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AM457_RS13980
• Genome accession: NZ_CP026761
• Coordinates: 2920079..2920780 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain AR_0078
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2915079..2925780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM457_RS13950 (AM457_13950)	-	2915386..2915829 (-)	444	WP_001246673.1	SRPBCC family protein	-
AM457_RS13955 (AM457_13955)	tadA	2915899..2916402 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
AM457_RS13960 (AM457_13960)	-	2916409..2917533 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
AM457_RS13965 (AM457_13965)	ung	2917530..2918243 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
AM457_RS13970 (AM457_13970)	-	2918294..2918890 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
AM457_RS13975 (AM457_13975)	gspK	2919120..2920079 (-)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
AM457_RS13980 (AM457_13980)	xcpW	2920079..2920780 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AM457_RS13985 (AM457_13985)	xcpV	2920780..2921160 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
AM457_RS13990 (AM457_13990)	-	2921150..2921704 (-)	555	WP_000841367.1	type II secretion system protein	-
AM457_RS13995 (AM457_13995)	-	2921714..2922322 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AM457_RS14000 (AM457_14000)	-	2922360..2923133 (-)	774	WP_000497302.1	TatD family hydrolase	-
AM457_RS14005 (AM457_14005)	-	2923151..2923492 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
AM457_RS14010 (AM457_14010)	-	2923504..2924484 (-)	981	WP_001075413.1	DNA polymerase III subunit delta'	-
AM457_RS14015 (AM457_14015)	kdsB	2924496..2925257 (-)	762	WP_000680703.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=272298 AM457_RS13980 WP_000594572.1 2920079..2920780(-) (xcpW) [Acinetobacter baumannii strain AR_0078]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=272298 AM457_RS13980 WP_000594572.1 2920079..2920780(-) (xcpW) [Acinetobacter baumannii strain AR_0078]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991