Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C2I25_RS20390 Genome accession   NZ_CP026678
Coordinates   3815806..3816585 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain TG1-6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3810806..3821585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS20370 (C2I25_20350) trmFO 3811460..3812764 (+) 1305 WP_098833591.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C2I25_RS20375 (C2I25_20355) xerC 3812830..3813729 (+) 900 WP_001101245.1 tyrosine recombinase XerC -
  C2I25_RS20380 (C2I25_20360) hslV 3813772..3814314 (+) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  C2I25_RS20385 (C2I25_20365) hslU 3814337..3815728 (+) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  C2I25_RS20390 (C2I25_20370) codY 3815806..3816585 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C2I25_RS20395 (C2I25_20375) rpsB 3816935..3817636 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  C2I25_RS20400 (C2I25_20380) tsf 3817740..3818627 (+) 888 WP_016080531.1 translation elongation factor Ts -
  C2I25_RS20405 (C2I25_20385) pyrH 3818694..3819416 (+) 723 WP_000042669.1 UMP kinase -
  C2I25_RS20410 (C2I25_20390) frr 3819419..3819976 (+) 558 WP_000531505.1 ribosome recycling factor -
  C2I25_RS20415 (C2I25_20395) uppS 3820062..3820838 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=271679 C2I25_RS20390 WP_000421290.1 3815806..3816585(+) (codY) [Bacillus cereus strain TG1-6]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=271679 C2I25_RS20390 WP_000421290.1 3815806..3816585(+) (codY) [Bacillus cereus strain TG1-6]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment