Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   C2I25_RS17320 Genome accession   NZ_CP026678
Coordinates   3273547..3275883 (+) Length   778 a.a.
NCBI ID   WP_000528080.1    Uniprot ID   A0A9X6LLC5
Organism   Bacillus cereus strain TG1-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3268547..3280883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS17300 (C2I25_17285) cymR 3269953..3270369 (+) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -
  C2I25_RS17305 (C2I25_17290) - 3270405..3271550 (+) 1146 WP_106824011.1 cysteine desulfurase family protein -
  C2I25_RS17310 (C2I25_17295) mnmA 3271567..3272682 (+) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  C2I25_RS17315 (C2I25_17300) - 3272792..3273451 (+) 660 WP_000066411.1 tetratricopeptide repeat protein -
  C2I25_RS17320 (C2I25_17305) recD2 3273547..3275883 (+) 2337 WP_000528080.1 ATP-dependent RecD-like DNA helicase Machinery gene
  C2I25_RS17325 (C2I25_17310) - 3276011..3276199 (+) 189 WP_000469281.1 hypothetical protein -
  C2I25_RS17330 (C2I25_17315) - 3276218..3276346 (+) 129 WP_001053553.1 YrzQ family protein -
  C2I25_RS17335 (C2I25_17320) - 3276393..3276605 (-) 213 WP_000242540.1 hypothetical protein -
  C2I25_RS17340 (C2I25_17325) - 3276782..3277849 (+) 1068 WP_000793129.1 AI-2E family transporter -
  C2I25_RS17345 (C2I25_17330) - 3277894..3278238 (-) 345 WP_000209465.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87551.07 Da        Isoelectric Point: 5.2628

>NTDB_id=271671 C2I25_RS17320 WP_000528080.1 3273547..3275883(+) (recD2) [Bacillus cereus strain TG1-6]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIQYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEVAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=271671 C2I25_RS17320 WP_000528080.1 3273547..3275883(+) (recD2) [Bacillus cereus strain TG1-6]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCACTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCGGAAAAAATTGTGGATCATCTCGGGGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGTTAAATGGTGTTGTTAACAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAAAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGACGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGAGCGGGATGTTTTTACACATTAGAGAATGTCTCA
TTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAAGAAGATATTATAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCAACTTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTCGATTGATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAGTTGAATGTACAATATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTAACAGGTGGACCAGGAACAGGAAAAACAACCGTTATTAAAG
GGATTGTTGAAATGTATGCGTCACTTCACGGATTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
GCTTGGCTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCGCTACCAACGAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGTGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCAGAAGGCTCATCTGTTATTCAACTTGCCCATGCGATTAAAGACGGCACACTCCCGCCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCGTTTATCAGCTGTACAGGGGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGC
GAAAACGCTAAAACAAAAGGCTTTAGTGCAAGGGATGTTCAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCGCTGCAACAAGTTTTTAACCCGAAAAGGGAAAAGAGTAAAGAAATCCAGTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTGCAACTTGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
AAAGCCGGATTTAAATCAAATTACACATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTGAAAAGTTACAACCGTATGTTACGCCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGTAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACTTTAGC
TAGTCGCTTGCAGGAATCACAAGGAGAAGTGCAGATGGTCACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment