Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   C3766_RS10690 Genome accession   NZ_CP026649
Coordinates   2128989..2131352 (-) Length   787 a.a.
NCBI ID   WP_104851461.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain R11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2123989..2136352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3766_RS10665 (C3766_10665) - 2124333..2124983 (-) 651 WP_014097896.1 HlyD family efflux transporter periplasmic adaptor subunit -
  C3766_RS10670 (C3766_10670) - 2124991..2125431 (-) 441 WP_026683588.1 MarR family winged helix-turn-helix transcriptional regulator -
  C3766_RS10675 (C3766_10675) dtd 2125613..2126053 (-) 441 WP_026683589.1 D-aminoacyl-tRNA deacylase -
  C3766_RS10680 (C3766_10680) - 2126067..2128255 (-) 2189 Protein_1996 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  C3766_RS10685 (C3766_10685) - 2128477..2128998 (-) 522 WP_014097892.1 adenine phosphoribosyltransferase -
  C3766_RS10690 (C3766_10690) recJ 2128989..2131352 (-) 2364 WP_104851461.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  C3766_RS10695 (C3766_10695) secDF 2131441..2133705 (-) 2265 WP_104851462.1 protein translocase subunit SecDF -
  C3766_RS10700 (C3766_10700) - 2133851..2134171 (-) 321 WP_017551048.1 post-transcriptional regulator -
  C3766_RS10705 (C3766_10705) spoVB 2134275..2135819 (+) 1545 WP_017551049.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88106.10 Da        Isoelectric Point: 5.6613

>NTDB_id=271250 C3766_RS10690 WP_104851461.1 2128989..2131352(-) (recJ) [Heyndrickxia coagulans strain R11]
MLQSRTRWRVPEMEPKAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGLAYYDPFLLHDMEKAAARIREAIKKE
EPVLVFGDYDADGVTSTAIMMAALNDLGAHAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GITLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEDLAAIGTVADLVPLLDENRLI
AINGIKRLRTTKRAGLVALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTEDTEEAGMLAETIDGLNKE
RQKIVNDMTNEAIELVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVEELRRRLNEQAAAFPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAECPQIRAIGADGKHLKLTLSKNGTTLDGIGFGLGHLAPHISPSAYISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWARYVPEEDQAFVVFQKETLRNLPLPDFSVRLVPVATMEEARAFDPSNKNIVFLDLPKGPRM
MAALLEGGSPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKQHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESLTYQKKLAQYQMEKDLLYSSFQELKMWFDQMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=271250 C3766_RS10690 WP_104851461.1 2128989..2131352(-) (recJ) [Heyndrickxia coagulans strain R11]
ATGCTGCAGTCAAGAACAAGATGGCGGGTGCCGGAAATGGAACCAAAAGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGCTAGCGTATTATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCGGCCCGCATCCGCGAAGCGATTAAAAAAGAA
GAACCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGTACTGCCATCATGATGGCCGCTTTAAACGATCT
TGGCGCCCATGCTGAATTTTATATCCCGGACCGGTTTAAAGAAGGGTATGGGCCAAATGAAGCGGCTTTCCGCCGGGCGG
CTGAAGAGGGTTTTCAGCTAATCATTACCGTTGATACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCGAACTC
GGGATCACGCTCATTATTACGGACCATCACGAACCTGGGCCGGTATTGCCGGAAGCCTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAGCTTGAAGATTTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTGGACGAAAACCGGCTGATT
GCCATAAACGGCATCAAACGGTTGAGAACGACAAAGCGGGCGGGGCTTGTGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATCAATGAAGAAACCATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCAGCCGGGCGCCTGCAGCATGCGGCAC
CGGCAGCGGAACTGCTAATGACCGAAGACACAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGACATGACAAATGAAGCAATCGAACTGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGCTGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGACCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGCATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGAGGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTTCCGGATGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCGGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGACGGGGCCGAATGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GACGCTTTCTAAAAACGGCACAACGCTCGATGGGATCGGCTTCGGGCTCGGGCATCTTGCCCCGCATATTTCCCCTTCTG
CCTATATATCGGTTGTCGGGGAGCTGTCCATCAATGAATGGAACAATATCCGCAAGCCGCAAATGATGGTGAAGGATATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGCACGGTACGTCCCGGAAGAAGA
CCAGGCTTTTGTTGTTTTTCAAAAAGAAACATTGCGGAACCTGCCGCTGCCGGATTTTTCCGTCCGCCTTGTGCCGGTTG
CGACAATGGAAGAGGCAAGGGCATTTGATCCTTCAAATAAAAACATTGTGTTTCTGGATCTTCCGAAAGGCCCGCGGATG
ATGGCGGCACTGCTTGAGGGCGGTTCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTCCCGACACGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTAAAGCAGCACGGGG
ATGAGCTGGCGGCTTATCGCGGCTGGTCGAGAAATACCATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTCTTACGTATCAAAAAAA
ACTAGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCAGGAGCTGAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(454-559)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.605

100

0.526

Multiple sequence alignment