Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AZO_RS18745 Genome accession   NC_008702
Coordinates   4092166..4093665 (-) Length   499 a.a.
NCBI ID   WP_011767458.1    Uniprot ID   A1KBZ6
Organism   Azoarcus olearius     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4087166..4098665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZO_RS18720 (azo3731) - 4087402..4088334 (+) 933 WP_011767453.1 branched-chain amino acid ABC transporter permease -
  AZO_RS18725 (azo3732) - 4088347..4089444 (+) 1098 WP_011767454.1 ABC transporter permease subunit -
  AZO_RS18730 (azo3733) - 4089441..4090214 (+) 774 WP_011767455.1 ABC transporter ATP-binding protein -
  AZO_RS18735 (azo3734) - 4090204..4090938 (+) 735 WP_011767456.1 ABC transporter ATP-binding protein -
  AZO_RS18740 (azo3735) - 4090917..4092113 (-) 1197 WP_011767457.1 multidrug effflux MFS transporter -
  AZO_RS18745 (azo3736) comM 4092166..4093665 (-) 1500 WP_011767458.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AZO_RS18750 (azo3737) - 4093748..4093999 (-) 252 WP_011767459.1 accessory factor UbiK family protein -
  AZO_RS18755 (azo3738) - 4094284..4095024 (+) 741 WP_011767460.1 TorF family putative porin -
  AZO_RS18760 (azo3739) glnK 4095083..4095421 (+) 339 WP_011767461.1 P-II family nitrogen regulator -
  AZO_RS18765 (azo3740) - 4095436..4096842 (+) 1407 WP_011767462.1 ammonium transporter -
  AZO_RS18770 (azo3741) - 4097062..4097757 (+) 696 WP_041642882.1 OmpW/AlkL family protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52378.07 Da        Isoelectric Point: 7.9737

>NTDB_id=27102 AZO_RS18745 WP_011767458.1 4092166..4093665(-) (comM) [Azoarcus olearius]
MSLAIVRARALDGLAAPEVTVEVHLANGLPAFNLVGLPDTEVREARDRVRAALVTSQFEFPQRRITVNLAPADLPKEGGR
FDLAIALGILAASGQVEAAALDHYEFCGELSLNGGLRAVRGVLAAALAAAGAGRALVLPRANAAEAALAPAATVLPADDL
LAVCAHLNRHTLLEAQPAAQPGPQDAALPDLADVRGQAQARRALEVAAAGGHSLLLFGPPGTGKSMLAQRLPGLLPPMDE
AEALASAALQSLEGVFDAARWGLRPFRAPHHSASAAALVGGGANPRPGEISLAHHGVLFLDELPEFDRRVLEALREPLET
GAVTVARARRRVEFPARFQLVAAMNPCPCGYAGHPRRACRCTPEQVARYRARLSGPLLDRMDLTVEVPALGHAELADSAP
GEASAAVRARVLAARELQRARQGRPNARLEPSAVGALCTPDDAGARLLAQAMERLNLSARAYHRVLRVARTLADLAGIEV
PGAAQVAEAIQYRRSLDAR

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=27102 AZO_RS18745 WP_011767458.1 4092166..4093665(-) (comM) [Azoarcus olearius]
ATGTCGCTCGCCATCGTGCGCGCCCGTGCGCTGGACGGTCTTGCCGCGCCCGAGGTGACGGTCGAAGTTCATCTGGCCAA
CGGCCTGCCGGCCTTCAACCTGGTCGGCCTGCCCGACACCGAGGTGCGCGAGGCGCGCGACCGGGTGCGCGCGGCGCTCG
TCACCTCGCAGTTCGAATTTCCCCAGCGCCGCATCACCGTCAACCTGGCGCCCGCCGACCTGCCGAAGGAGGGCGGCCGT
TTCGATCTTGCGATCGCACTCGGCATCCTCGCCGCCTCCGGACAGGTGGAAGCGGCGGCGCTTGACCACTACGAATTCTG
CGGCGAACTCTCGCTCAACGGCGGCTTGCGCGCGGTGCGCGGCGTGCTCGCGGCGGCGCTTGCCGCGGCAGGTGCGGGGC
GCGCGCTGGTGCTGCCGCGCGCCAATGCGGCCGAAGCCGCGCTGGCGCCGGCGGCCACCGTGCTGCCTGCCGATGACCTG
CTCGCGGTCTGCGCCCATCTCAACCGCCATACCCTGCTCGAAGCACAGCCCGCCGCGCAGCCCGGCCCGCAGGACGCGGC
ACTGCCGGACCTCGCCGATGTGCGCGGCCAGGCCCAGGCCCGGCGGGCGCTGGAAGTCGCGGCGGCCGGCGGTCATTCGC
TGCTGCTGTTCGGTCCGCCCGGCACCGGCAAGTCGATGCTCGCGCAGCGGCTGCCCGGCCTGCTGCCGCCGATGGATGAG
GCCGAGGCGCTCGCCAGTGCCGCGCTGCAGTCGCTCGAGGGCGTGTTCGACGCCGCGCGCTGGGGCCTGCGTCCGTTCCG
TGCGCCCCATCATTCGGCCTCGGCCGCGGCGCTGGTGGGCGGCGGCGCCAATCCGCGCCCCGGCGAAATCTCGCTTGCCC
ATCACGGCGTGCTGTTTCTCGACGAACTGCCGGAATTCGACCGCCGCGTGCTCGAAGCGCTGCGCGAACCGCTCGAAACC
GGCGCGGTCACGGTCGCGCGGGCGCGGCGGCGGGTGGAGTTTCCCGCCCGTTTCCAGCTGGTCGCGGCGATGAATCCCTG
CCCCTGCGGCTACGCCGGCCATCCGCGCCGGGCCTGCCGCTGCACCCCTGAACAAGTCGCGCGCTATCGGGCGCGGCTGT
CCGGCCCTCTGCTCGACCGCATGGACCTCACGGTGGAAGTGCCGGCGCTTGGTCACGCGGAACTTGCGGATTCGGCCCCC
GGCGAGGCGAGCGCCGCGGTACGCGCGCGGGTGCTCGCCGCGCGCGAGCTGCAGCGCGCCCGCCAAGGGAGGCCCAACGC
CCGCCTCGAACCGTCCGCGGTGGGCGCGTTGTGCACGCCCGACGATGCCGGCGCGCGCCTGCTGGCGCAGGCGATGGAGC
GGCTGAACCTGTCGGCGCGGGCGTATCATCGCGTGCTTAGAGTGGCGCGCACCCTGGCCGATCTCGCCGGCATCGAGGTG
CCCGGCGCCGCCCAGGTCGCGGAAGCCATCCAGTACCGCCGCAGTCTCGACGCCCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KBZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.618

99.8

0.545
  comM Haemophilus influenzae Rd KW20

53.082

100

0.535
  comM Vibrio campbellii strain DS40M4

53.737

99.198

0.533
  comM Glaesserella parasuis strain SC1401

51.889

100

0.523
  comM Legionella pneumophila str. Paris

49.203

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.203

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.059

100

0.457

Multiple sequence alignment