Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | SGO_RS08970 | Genome accession | NC_009785 |
| Coordinates | 1904586..1905854 (+) | Length | 422 a.a. |
| NCBI ID | WP_012130862.1 | Uniprot ID | A8AZ87 |
| Organism | Streptococcus gordonii str. Challis substr. CH1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1899586..1910854
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SGO_RS08945 (SGO_1823) | - | 1901256..1901999 (-) | 744 | WP_012130857.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| SGO_RS08950 (SGO_1824) | prmA | 1902000..1902953 (-) | 954 | WP_041789789.1 | 50S ribosomal protein L11 methyltransferase | - |
| SGO_RS08955 (SGO_1825) | - | 1903096..1903566 (-) | 471 | WP_012130859.1 | GNAT family N-acetyltransferase | - |
| SGO_RS08960 (SGO_1826) | - | 1903563..1904018 (-) | 456 | WP_012130860.1 | NUDIX hydrolase | - |
| SGO_RS08965 (SGO_1827) | - | 1904028..1904498 (-) | 471 | WP_012130861.1 | DUF3013 family protein | - |
| SGO_RS08970 (SGO_1828) | rarA | 1904586..1905854 (+) | 1269 | WP_012130862.1 | replication-associated recombination protein A | Machinery gene |
| SGO_RS08980 (SGO_1830) | - | 1906323..1907804 (-) | 1482 | WP_012130863.1 | M protein trans-acting positive regulator PRD domain-containing protein | - |
| SGO_RS08985 (SGO_1831) | - | 1908101..1908340 (+) | 240 | WP_012130864.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| SGO_RS08990 (SGO_1832) | amaP | 1908396..1908977 (+) | 582 | WP_012130865.1 | alkaline shock response membrane anchor protein AmaP | - |
| SGO_RS10780 (SGO_1833) | - | 1908989..1909159 (+) | 171 | WP_002899156.1 | DUF2273 domain-containing protein | - |
| SGO_RS09000 (SGO_1834) | - | 1909177..1909767 (+) | 591 | WP_012130866.1 | Asp23/Gls24 family envelope stress response protein | - |
| SGO_RS09005 (SGO_1835) | - | 1909851..1910054 (+) | 204 | WP_008809820.1 | CsbD family protein | - |
Sequence
Protein
Download Length: 422 a.a. Molecular weight: 46703.37 Da Isoelectric Point: 6.2522
>NTDB_id=27102 SGO_RS08970 WP_012130862.1 1904586..1905854(+) (rarA) [Streptococcus gordonii str. Challis substr. CH1]
MPENLALRMRPTGIDQIIGQQHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNDDIRTAIQ
LALTDKERGFDFPVELDKEALDFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQRIGFPEARILIANIV
IDLALSPKSNSAYVAMDKALADLRKNGNLPIPRHLRDGHYAGSKELGNAQDYLYPHSYPGNWIKQDYLPDKIKDANYFMP
NENGKYERALGMTKDKIDQLKK
MPENLALRMRPTGIDQIIGQQHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNDDIRTAIQ
LALTDKERGFDFPVELDKEALDFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQRIGFPEARILIANIV
IDLALSPKSNSAYVAMDKALADLRKNGNLPIPRHLRDGHYAGSKELGNAQDYLYPHSYPGNWIKQDYLPDKIKDANYFMP
NENGKYERALGMTKDKIDQLKK
Nucleotide
Download Length: 1269 bp
>NTDB_id=27102 SGO_RS08970 WP_012130862.1 1904586..1905854(+) (rarA) [Streptococcus gordonii str. Challis substr. CH1]
ATGCCAGAAAACCTCGCCCTGCGCATGCGGCCGACCGGCATTGATCAGATCATCGGCCAGCAACATCTGGTCGGACCTGG
AAAAATCATCCGTCGCATGGTTGAAGCCAACCGCCTGTCCTCAATGATTCTCTACGGGCCACCAGGTATCGGCAAAACCT
CTATCGCCTCAGCTATTGCCGGCACAACTAAATATGCTTTTCGGACCTTTAATGCCACCGTAGATAGCAAGAAACGCCTA
CAAGAGATTGCTGAAGAAGCGAAATTTTCCGGCGGACTGGTGCTCCTACTGGACGAGATTCACCGTTTGGATAAAACAAA
ACAAGACTTTCTACTGCCGCTATTAGAAAGCGGTCTGGTCATCATGATTGGAGCGACGACAGAAAATCCTTTCTTTTCTG
TCACCCCAGCCATCCGAAGTCGGGTCCAGATATTTGAGCTTGAACCCCTCAGCAACGACGACATCCGGACAGCTATTCAG
CTAGCTTTGACAGATAAGGAAAGAGGATTTGATTTTCCAGTGGAGCTAGACAAAGAAGCTCTGGATTTCATTGCCATCTC
TACCAACGGAGACCTGCGCTCCGCTTATAATTCGCTGGATTTAGCCGTGCTCTCTACCCCAGAAGATGACAAGGGCATTC
GCCACATCACGCTTGATGTCATGGAAAACAGCCTACAAAAGAGCTACATCACGATGGATAAGGATGGGGACGGCCATTAC
GATGTCCTCTCCGCCCTGCAGAAGTCCATACGTGGCTCCGATGTCAATGCCAGCCTCCACTACGCGGCTCGCCTCGTTGA
GGCAGGAGACCTCCCTAGCCTAGCTCGACGCTTGACCGTTATCGCTTACGAGGATATTGGTCTGGCAAATCCTGACGCTC
AAGTCCATACCGTTACAGCTCTGGAAGCAGCTCAACGGATCGGCTTTCCAGAAGCTCGCATCCTCATTGCCAATATTGTT
ATTGACCTTGCGCTTTCGCCCAAGTCCAACTCAGCCTATGTGGCTATGGACAAGGCCTTAGCCGACCTACGAAAGAATGG
AAATCTCCCCATTCCACGGCACTTACGCGACGGACACTATGCAGGAAGCAAAGAATTGGGCAATGCACAGGACTATCTCT
ACCCTCACTCCTATCCTGGCAATTGGATCAAGCAAGACTATCTGCCTGATAAGATAAAAGACGCCAATTATTTCATGCCT
AACGAAAACGGCAAATACGAGCGAGCCCTTGGAATGACAAAGGATAAGATTGATCAGCTCAAAAAATGA
ATGCCAGAAAACCTCGCCCTGCGCATGCGGCCGACCGGCATTGATCAGATCATCGGCCAGCAACATCTGGTCGGACCTGG
AAAAATCATCCGTCGCATGGTTGAAGCCAACCGCCTGTCCTCAATGATTCTCTACGGGCCACCAGGTATCGGCAAAACCT
CTATCGCCTCAGCTATTGCCGGCACAACTAAATATGCTTTTCGGACCTTTAATGCCACCGTAGATAGCAAGAAACGCCTA
CAAGAGATTGCTGAAGAAGCGAAATTTTCCGGCGGACTGGTGCTCCTACTGGACGAGATTCACCGTTTGGATAAAACAAA
ACAAGACTTTCTACTGCCGCTATTAGAAAGCGGTCTGGTCATCATGATTGGAGCGACGACAGAAAATCCTTTCTTTTCTG
TCACCCCAGCCATCCGAAGTCGGGTCCAGATATTTGAGCTTGAACCCCTCAGCAACGACGACATCCGGACAGCTATTCAG
CTAGCTTTGACAGATAAGGAAAGAGGATTTGATTTTCCAGTGGAGCTAGACAAAGAAGCTCTGGATTTCATTGCCATCTC
TACCAACGGAGACCTGCGCTCCGCTTATAATTCGCTGGATTTAGCCGTGCTCTCTACCCCAGAAGATGACAAGGGCATTC
GCCACATCACGCTTGATGTCATGGAAAACAGCCTACAAAAGAGCTACATCACGATGGATAAGGATGGGGACGGCCATTAC
GATGTCCTCTCCGCCCTGCAGAAGTCCATACGTGGCTCCGATGTCAATGCCAGCCTCCACTACGCGGCTCGCCTCGTTGA
GGCAGGAGACCTCCCTAGCCTAGCTCGACGCTTGACCGTTATCGCTTACGAGGATATTGGTCTGGCAAATCCTGACGCTC
AAGTCCATACCGTTACAGCTCTGGAAGCAGCTCAACGGATCGGCTTTCCAGAAGCTCGCATCCTCATTGCCAATATTGTT
ATTGACCTTGCGCTTTCGCCCAAGTCCAACTCAGCCTATGTGGCTATGGACAAGGCCTTAGCCGACCTACGAAAGAATGG
AAATCTCCCCATTCCACGGCACTTACGCGACGGACACTATGCAGGAAGCAAAGAATTGGGCAATGCACAGGACTATCTCT
ACCCTCACTCCTATCCTGGCAATTGGATCAAGCAAGACTATCTGCCTGATAAGATAAAAGACGCCAATTATTTCATGCCT
AACGAAAACGGCAAATACGAGCGAGCCCTTGGAATGACAAAGGATAAGATTGATCAGCTCAAAAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
59.42 |
98.104 |
0.583 |