Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D1F63_RS07960 Genome accession   NZ_CP031770
Coordinates   1517689..1518471 (-) Length   260 a.a.
NCBI ID   WP_002992569.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SASM4-Duke     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512689..1523471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1F63_RS07930 (D1F63_07930) gatB 1512766..1514205 (-) 1440 WP_011528910.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  D1F63_RS07935 (D1F63_07935) gatA 1514205..1515671 (-) 1467 WP_011528911.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  D1F63_RS07940 (D1F63_07940) gatC 1515671..1515973 (-) 303 WP_002988561.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  D1F63_RS10170 (D1F63_07945) - 1516205..1516529 (-) 325 Protein_1476 putative PEP-binding protein -
  D1F63_RS07955 (D1F63_07955) - 1516988..1517542 (-) 555 WP_002988559.1 cysteine hydrolase family protein -
  D1F63_RS07960 (D1F63_07960) codY 1517689..1518471 (-) 783 WP_002992569.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D1F63_RS07965 (D1F63_07965) - 1518688..1519902 (-) 1215 WP_011528914.1 pyridoxal phosphate-dependent aminotransferase -
  D1F63_RS07970 (D1F63_07970) - 1520133..1520585 (+) 453 WP_002983265.1 universal stress protein -
  D1F63_RS07975 (D1F63_07975) - 1520707..1522095 (-) 1389 WP_010922607.1 Cof-type HAD-IIB family hydrolase -
  D1F63_RS07980 (D1F63_07980) - 1522167..1523132 (+) 966 WP_011528916.1 asparaginase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28634.75 Da        Isoelectric Point: 4.5065

>NTDB_id=270856 D1F63_RS07960 WP_002992569.1 1517689..1518471(-) (codY) [Streptococcus pyogenes strain SASM4-Duke]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPVESKDTYPGGLTTIAPIYGGGMRLGSLIIWRNDDEFSDDDLILVEISSTVVGIQLLN
LQTENLEDTIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFAKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=270856 D1F63_RS07960 WP_002992569.1 1517689..1518471(-) (codY) [Streptococcus pyogenes strain SASM4-Duke]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATCACATCTATTTTGCAGCGTTCCGTAGATAGCCTAGAAACAGAATTACC
GTATAACACAATGGCATCTCGCCTAGCAGATATCATTGACTGCAATGCTTGTATTATCAATGGCGGCGGCACACTGCTTG
GTTATGCCATGAAATATAAAACTAACACTGATCGTGTTGAGGAATTTTTTGAAGCTAAACAATTTCCAGATACTTATGTA
AAGGCTGCTAGCCGAGTTTACGATACAGAAGCTAACCTTTCTGTCGAAAATGAATTGACTATATTCCCTGTTGAGTCTAA
AGACACTTATCCAGGAGGTCTAACGACTATTGCGCCGATTTATGGTGGAGGGATGCGCCTTGGATCACTCATTATCTGGC
GTAATGACGATGAGTTTAGTGATGATGATTTGATTTTGGTTGAGATCTCAAGTACTGTTGTGGGGATTCAACTATTAAAT
CTTCAGACAGAAAACTTAGAAGACACCATCCGTAAACAAACAGCGGTCAACATGGCAATTAATACGCTTTCTTATTCAGA
AATGAAAGCTGTTGCAGCAATTCTTGGAGAGTTAGATGGTAATGAAGGACGATTGACAGCTTCTGTTATTGCTGATCGTA
TTGGTATTACCCGTTCTGTTATTGTCAATGCTCTGCGTAAACTAGAAAGTGCAGGGATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGGACATACCTCAAAGTTATCAACGAAGGTATTTTTGCTAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.846

0.654
  codY Bacillus subtilis subsp. subtilis str. 168

51.765

98.077

0.508