Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   C3496_RS27030 Genome accession   NZ_CP026608
Coordinates   5276930..5279266 (-) Length   778 a.a.
NCBI ID   WP_136444614.1    Uniprot ID   A0A4S4HW36
Organism   Bacillus anthracis strain HDZK-BYSB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5271930..5284266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3496_RS27005 (C3496_28375) - 5274592..5274936 (+) 345 WP_136444616.1 PH domain-containing protein -
  C3496_RS27010 (C3496_28380) - 5274975..5276042 (-) 1068 WP_000793108.1 AI-2E family transporter -
  C3496_RS27015 (C3496_28385) - 5276219..5276431 (+) 213 WP_000242546.1 hypothetical protein -
  C3496_RS27020 (C3496_28390) - 5276467..5276595 (-) 129 WP_001053553.1 YrzQ family protein -
  C3496_RS27025 (C3496_28395) - 5276614..5276802 (-) 189 WP_000469281.1 hypothetical protein -
  C3496_RS27030 (C3496_28400) recD2 5276930..5279266 (-) 2337 WP_136444614.1 ATP-dependent RecD-like DNA helicase Machinery gene
  C3496_RS27035 (C3496_28405) - 5279362..5280021 (-) 660 WP_074614881.1 tetratricopeptide repeat protein -
  C3496_RS27040 (C3496_28410) mnmA 5280132..5281247 (-) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  C3496_RS27045 (C3496_28415) - 5281264..5282409 (-) 1146 WP_000439909.1 cysteine desulfurase family protein -
  C3496_RS27050 (C3496_28420) cymR 5282445..5282861 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87457.98 Da        Isoelectric Point: 5.2015

>NTDB_id=270721 C3496_RS27030 WP_136444614.1 5276930..5279266(-) (recD2) [Bacillus anthracis strain HDZK-BYSB7]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLIRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGVQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGVEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=270721 C3496_RS27030 WP_136444614.1 5276930..5279266(-) (recD2) [Bacillus anthracis strain HDZK-BYSB7]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGACATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAACGTACAGCTGAAAAAATTGTGGACCATCTAGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAACGGTGTTGTTAACAAACAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAGTATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCATATCAGCTTATTGAAGAAGTGGATGGGATTGGATTTGGAAGAGCGGATGATA
TCGGACGTGCGTTAGGTATATCGGGTAATCATGATGATCGTGTACGCGCGGGATGTTTTTATACGTTAGAGAATGTATCA
TTACAACTTGGTCACGTTTATATGAGAAAAGATCAACTTATAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACAGAGGAAGACATTATAAGCTGTATTGAAATGATGCAAAGTGAAGGGAAAGTCATCATCGAAGAAGAGCGAGTAT
ATTTGGCATCGTTATTCTATTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTCATGAATCAGGAAGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAATTGAACGTACAGTATGCACCGCTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACGGGTGGACCAGGAACGGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGCACAATTCACCGTTT
ACTTGGATGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAATATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGGCAAGTATTGAAAGATTTATTAAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTGATTCAACTTGCTCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGTTCAAATTGTTGAGGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGGGATGTACAAGTATTGGCCCCCATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTTTTGCAACTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAGTTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCTTATTGCTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCCATTGTGA
TTATGCCGATAGTGAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTTCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGCCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S4HW36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.269

100

0.582

Multiple sequence alignment