Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C3496_RS24205 Genome accession   NZ_CP026608
Coordinates   4762599..4763378 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus anthracis strain HDZK-BYSB7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4757599..4768378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3496_RS24180 (C3496_25425) uppS 4758346..4759122 (-) 777 WP_000971301.1 isoprenyl transferase -
  C3496_RS24185 (C3496_25430) frr 4759208..4759765 (-) 558 WP_000531503.1 ribosome recycling factor -
  C3496_RS24190 (C3496_25435) pyrH 4759768..4760490 (-) 723 WP_000042663.1 UMP kinase -
  C3496_RS24195 (C3496_25440) tsf 4760557..4761444 (-) 888 WP_001018581.1 translation elongation factor Ts -
  C3496_RS24200 (C3496_25445) rpsB 4761548..4762249 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  C3496_RS24205 (C3496_25450) codY 4762599..4763378 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C3496_RS24210 (C3496_25455) hslU 4763456..4764847 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  C3496_RS24215 (C3496_25460) hslV 4764870..4765412 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  C3496_RS24220 (C3496_25465) xerC 4765455..4766354 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  C3496_RS24225 (C3496_25470) trmFO 4766420..4767724 (-) 1305 WP_001991958.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=270713 C3496_RS24205 WP_000421288.1 4762599..4763378(-) (codY) [Bacillus anthracis strain HDZK-BYSB7]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=270713 C3496_RS24205 WP_000421288.1 4762599..4763378(-) (codY) [Bacillus anthracis strain HDZK-BYSB7]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment